Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0203
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 35 0.007
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 0.81
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.3
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 5.7
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.7
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 7.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 7.5
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 10.0
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 10.0
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 10.0
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 35.1 bits (77), Expect = 0.007
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = +1
Query: 64 LLPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TA 243
LLP+ S TP S TTA+S T PL N ST T A S+ +S +S +T T+
Sbjct: 281 LLPSSTPSSTPLSSANSTTATSASST--PLTSVN-STTTTSASSTPLSSVSSANSTTATS 337
Query: 244 WSTPP 258
S+ P
Sbjct: 338 TSSTP 342
Score = 34.7 bits (76), Expect = 0.009
Identities = 28/64 (43%), Positives = 34/64 (53%)
Frame = +1
Query: 64 LLPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TA 243
+LPT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 414 VLPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSA 468
Query: 244 WSTP 255
STP
Sbjct: 469 SSTP 472
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +1
Query: 64 LLPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRT 180
+LPT S TP S TTA+S T PL N +T T
Sbjct: 528 VLPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 0.81
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +3
Query: 87 SDSKLEDDLYNSILVADYDNAVEKSKQIYED--KKSEVITNVVNKLIRN--NKMNCMEYA 254
++ KL L N+I++ SK++ E KKS+ + N VNK+ +N N + + A
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQA 198
Query: 255 TSSGCKA 275
G KA
Sbjct: 199 REQGSKA 205
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 99 LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 230
LE+D + ++ + A+ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 67 LPTEPQSPTPNSKTI-FTTASSLPITTMPLKKANR 168
LPT PQ+P +TI T SL T P+ A R
Sbjct: 95 LPTTPQTPKTPKRTIQIVTPKSLNRTCNPVPFATR 129
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 5.7
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = -3
Query: 430 VLAIAVGKSAIVVAVIAQRQXKTV-----ALVHQL--NVVFGENKCELNREALPDDILGA 272
VL +++ S+IV V+ + K++ L+H L ++ + E R+ + D +LG+
Sbjct: 492 VLGVSIS-SSIVQTVLGIKLRKSLDFDVDELLHHLRKDISYVHRLPEEIRQTVLDALLGS 550
Query: 271 LHPELVAYSMQFILLFRMSLF 209
+H + S F F S+F
Sbjct: 551 IHYSFLFVSFMFFCAFVCSMF 571
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 484 LVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQXKTVALVHQLNVVFGENKCEL 308
L +LP +++PAD ++ + G +VVA +T VH ++ V C+L
Sbjct: 733 LSILPIYSQMPADLQAKIFDSAEPGVRKVVVAT---NIAETSLTVHGISYVVDTGYCKL 788
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 72 NGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 245
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ +
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESL 699
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 67 LPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRS 171
L T S P+S T+ +++SSL +++ P+ ++ S
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 167 DLR-GQEERSHHKCRKQTHTKQQDEL 241
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 412 LRRWQGQDESKSQLEVRSSV 471
L + QGQDE+KS E SSV
Sbjct: 754 LEQEQGQDEAKSPAEQSSSV 773
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 174 EDKKSEVITNVVNKLIRNNKMNCMEYATSSGCK 272
E ++ VI + + L+++ MNC +YA S C+
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCR 1143
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 416 GDGKDKTSPKVSWKFVPLWENNKVYFKIV 502
G G D K SW+ PLW K+Y K++
Sbjct: 300 GYGFDARKRK-SWETYPLWVQVKLYEKVL 327
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,518
Number of Sequences: 5004
Number of extensions: 35338
Number of successful extensions: 130
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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