Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0203
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0110 + 25632514-25632834,25633200-25634039 29 2.5
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 29 2.5
11_06_0232 + 21559467-21559532,21559586-21560200 29 3.3
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 27 7.7
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 27 7.7
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 7.7
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 27 7.7
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 43 CVFSWRLL-LPTEPQSP-TPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKS 195
C +S RL+ LP P SP +P S I + S P KKA +S + + S
Sbjct: 185 CSWSSRLMVLPPPPASPPSPASAVISPSESGTAAPAFPAKKAAKSAKKKDGPS 237
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 529 TSNTDYASVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVI 383
T NT Y ++ N + L+ L + P D+W+ L A++VG IVV ++
Sbjct: 223 TENTIYRTLINFQKKLINLQVVEDDP-DYWSGLSAALSVGWLDIVVNML 270
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 85 SPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 228
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 70 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 249
PT+ SPT +S + A+S ++ + K R RR+ S +S + T A
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET--NALQ 64
Query: 250 TPPALDARLQGYR 288
LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 70 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 249
PT+ SPT +S + A+S ++ + K R RR+ S +S + T A
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET--NALQ 64
Query: 250 TPPALDARLQGYR 288
LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 70 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 249
PT+ SPT +S + A+S ++ + K R RR+ S +S + T A
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET--NALQ 64
Query: 250 TPPALDARLQGYR 288
LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 212 QTHTKQQDELHGVRHQLWMQGSKDIVRECFPVEFTLIFAENNI 340
Q+H+ QD+ H + QGS + + PV+ TL+ N+
Sbjct: 330 QSHSYPQDDFHKNVARTLSQGSTPMSMDFHPVQQTLLLVGTNV 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,375
Number of Sequences: 37544
Number of extensions: 229297
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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