Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0203
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   1.9  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   29   3.4  
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          29   3.4  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   4.5  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     28   5.9  
SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)               27   7.9  
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +1

Query: 352 QARRSXFDVAR*QQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 483
           Q  R  F++   QQQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 67  LPTEPQSPTPNSKTIFT-----TASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 231
           LPT  ++PTP ++ +FT     TA  +P T        + T  R   + Q+  T    TT
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTKRVPTTGQIQATPEMPTT 240

Query: 232 R 234
           +
Sbjct: 241 K 241


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 79  PQSPTPNSKTIFTTASSL----PITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 246
           P S +  S T +T  SSL    P   +       S+R+     S+ S  ++Y+    T W
Sbjct: 247 PASVSTQSCTAYTPTSSLYDSRPHPVITSNPNAASSRSTDYSMSRYSNNDAYDRATPT-W 305

Query: 247 STPPALDARLQGYRPGVLP 303
           S P +   RL   + GV+P
Sbjct: 306 SAPASQTPRLSHMKDGVVP 324


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 73  TEPQSPTPNSKTIFTTASSLPITTMP--LKKANRSTRTRRAKSSQ 201
           T P  PTP  K   +  +++P+T +P    K  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 64  LLPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTR 177
           +L T    P+ NS++  +  S LP+T+ P+K+  + TR
Sbjct: 748 ILSTNHDEPS-NSRSTHSLYSPLPVTSTPVKRFRKITR 784


>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
          Length = 828

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 365 LXLTLRDDSNNDGRLAYGDGKD 430
           + + L DD NNDG   Y DG D
Sbjct: 691 MMIMLNDDDNNDGNGVYVDGGD 712


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 333 FSAKISVNSTGKHSRTISLEPCIQS 259
           F++ +S   T  H R++S +PC+Q+
Sbjct: 569 FASAVSSKKTAIHHRSVSEDPCVQT 593


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +1

Query: 76   EPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTP 255
            EP SP+    +    +S+LP T++P+  A  ST T   K++ ++ ++S +    T+   P
Sbjct: 1080 EP-SPSLTLSSSEAASSTLPPTSLPV--AQSSTSTSTVKTAAVTPSSSTQVVAPTSTIQP 1136

Query: 256  PALDARL 276
            P  ++ L
Sbjct: 1137 PVSESLL 1143


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 221  TKQQDELHGVRHQLWMQGSKDIVRECFPVEFTLI 322
            +   DE  G  HQLW +   D+V+E   V  TL+
Sbjct: 1238 SSSMDESMGDFHQLWEKLVSDVVKEFHSVPVTLL 1271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,253
Number of Sequences: 59808
Number of extensions: 272685
Number of successful extensions: 967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)