Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0203
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.52 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +1

Query: 244  WSTPPALDARLQGYRPGVLPC*VHTYFRRKQ-H*ADVQARRSXFDVAR*QQQRWQTCLRR 420
            W+ PP + +      P V       YF   +      Q R +     + QQQ+ Q   ++
Sbjct: 1164 WNPPPFMPSPFMAGAPNVPTILPEQYFATSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQ 1223

Query: 421  WQGQDESKSQLEVRSSVGEQQGLLQ 495
             Q Q + + Q + R   G   G+ +
Sbjct: 1224 QQQQQQQQQQHQAREREGVGAGIAE 1248


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 91  TPNSKTIFTTASSLPITTMPLKKANRSTRT 180
           TP +  I  + +++PIT++P    + ++ T
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 424 QGQDESKSQLEVRSSVGEQQGLLQDCEH*RNQYL 525
           Q  D+ K+   ++    +QQ L+Q  +  ++QYL
Sbjct: 165 QTADKKKASAPLQQLALQQQRLIQQLQITQSQYL 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,274
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)