Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0203
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    33   0.13 
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    30   1.2  
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    29   2.1  
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family...    29   2.8  
At3g18590.1 68416.m02363 plastocyanin-like domain-containing pro...    29   2.8  
At5g52950.1 68418.m06570 expressed protein ; expression supporte...    28   3.7  
At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    28   3.7  
At4g31110.1 68417.m04415 wall-associated kinase, putative simila...    28   3.7  
At4g31100.1 68417.m04414 wall-associated kinase, putative              28   3.7  
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac...    28   3.7  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    28   3.7  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    28   4.9  
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    27   6.4  
At1g79680.1 68414.m09293 wall-associated kinase, putative simila...    27   8.5  
At1g69730.1 68414.m08024 protein kinase family protein contains ...    27   8.5  

>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 3   EPDAQKMKT-VQVILCLFVASFIANGTSVSDSKLEDDLYNSI--LVADYDNAVEKSKQIY 173
           + D  ++KT VQ I C+      A+ T++  SK  DDL   I  L+ D +  +E  +Q+ 
Sbjct: 709 DDDQMEVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVA 768

Query: 174 EDKKSEVITNVVNKLIRNN 230
           E+  S     +      NN
Sbjct: 769 EENSSRAWGKIETDSSSNN 787


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +3

Query: 18  KMKTVQVILCLFVASFIANGTSVSDSKL-EDDLYNSILVADYDNAVEKSKQIYEDKKSEV 194
           K KT Q +LC+   +      S + +++  D++ + I+  DYD  V+ S  I  ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457

Query: 195 ITNVVN 212
           +TN V+
Sbjct: 458 LTNGVD 463


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 84  VSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEY 251
           +   KLED L  SIL     N+  K ++++  K+   +T+ VN+L  + ++    Y
Sbjct: 359 IDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQSY 412


>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
           protein
          Length = 532

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 233 DELHGVRHQLWMQGSK-DIVRECFPVEFTLIFAENNIKLMYKRDGLXLT--LRDDSNNDG 403
           D++  +  +L ++G + D V   F V    +F    +   Y RD    T  + DDSNN G
Sbjct: 299 DQMPDMIEELIIRGQQLDAVHFTFEVGLVHLFPPVPLLKAYLRDAKKATALITDDSNNSG 358

Query: 404 RLAY 415
           R A+
Sbjct: 359 RSAH 362


>At3g18590.1 68416.m02363 plastocyanin-like domain-containing
           protein
          Length = 188

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 82  QSPTPNSKTIFTTASSLPITTMPLKKAN 165
           +SP P+S +  +++SSLP +T   KK+N
Sbjct: 134 ESPPPSSSSSSSSSSSLPASTPKAKKSN 161


>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +3

Query: 54  VASFIANGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNK 233
           + SF  +  S+    L+   ++S L+  +DN V      +ED + +V  +   +  R N 
Sbjct: 430 LVSFSNSNGSLRTGILKPFTFSSALICVFDNGVSPQTVDHEDSRKKVSCSEYKRKPRKNS 489

Query: 234 MN 239
           +N
Sbjct: 490 LN 491


>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 281 PWSLASRAGGVLHAVHLVVSYEFVYDICXXXXXXXXXXXXXXFNGIVVIGNEDAVVKIV 105
           P+S   R   +LHA HL   Y+   + C                G ++I +E+++V  V
Sbjct: 505 PFSTYPRTYDLLHADHLFTHYKIYGEGCLLEDIMLEMDRIIRPQGFIIIRDEESIVSRV 563


>At4g31110.1 68417.m04415 wall-associated kinase, putative similar
           to wall-associated kinase 1, Arabidopsis thaliana,
           gb:AJ009696
          Length = 756

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 209
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 430 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 462


>At4g31100.1 68417.m04414 wall-associated kinase, putative
          Length = 786

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 209
           +Y  +LV     AV+KSK I EDK  E I  VV
Sbjct: 458 VYKGMLVDGRTVAVKKSKVIDEDKLQEFINEVV 490


>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
           family protein contains Pfam profile PF00847: AP2 domain
          Length = 226

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  PTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSY 222
           P PN++  +    +  +TT+ ++K     R+RR +S  M   + Y
Sbjct: 36  PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 84  VSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEY 251
           +   KLED L  SIL     N+  K ++++  K+   I + VN+L R+ ++    Y
Sbjct: 319 IDSLKLEDKLKKSILKKAVLNSETKDQKVF--KEYSWIIDAVNRLFRSRRILSYSY 372


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 209
           +Y  +LV     AV+KSK + EDK  E I  VV
Sbjct: 465 VYKGMLVDGRTVAVKKSKVVDEDKLEEFINEVV 497


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = -3

Query: 490 VDLVVLPQRNELPADFWTRLVLAIAVGKSAIVVAVIAQRQXKTVALVHQLNVVFGENKCE 311
           VDLV+       P D+  R+      G+  + V++I +   K   L+H++    G+    
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVK---LIHKIEEEVGKKMEP 427

Query: 310 LNREALPDDI 281
            N++ + D +
Sbjct: 428 YNKKVITDSL 437


>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
           to wall-associated kinase 2 GI:4826399 from [Arabidopsis
           thaliana]
          Length = 769

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 209
           +Y  +LV     AV+KSK + EDK  E I  VV
Sbjct: 447 VYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVV 479


>At1g69730.1 68414.m08024 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 792

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 LYNSILVADYDNAVEKSKQIYEDKKSEVITNVV 209
           +Y  +LV     AV+KSK + EDK  E I  VV
Sbjct: 461 VYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVV 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,471,252
Number of Sequences: 28952
Number of extensions: 187645
Number of successful extensions: 738
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)