Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0202
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 3.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 5.7
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 5.7
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 5.7
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 5.7
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 5.7
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.9
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 32 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 211
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 212 TEKTQKSLFDGI 247
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 216 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 85
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 2.5
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +1
Query: 217 EDPEVFIRRYREVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTE 396
+ PE ++Y+E D K + P+PD A A EK K G+ N + +
Sbjct: 89 KSPEGIEQKYQEEDLKDDKKSNETIATPVPDA-ASRASLEKQK--SGLTNLEKSTHVVLI 145
Query: 397 TCXKNPLPXKDVIEQEK 447
C + + K ++ EK
Sbjct: 146 KCIEQLIQIKVCMKNEK 162
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 223 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 119
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 225 WVFSVATSSADGSTIFSLVSTSRRQL 148
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 228 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 130
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 7.5
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 83 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 253
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 9.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +3
Query: 234 YSTVSRS*FEPAEA-----HRDSGEEPASGQRRYRSGEGKEQ 344
YS+ S S FE + +R EEP S +RR R G G +
Sbjct: 195 YSSWSGSNFESSNGSNRRRYRTQMEEPLSSKRRNRFGNGSRR 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,194
Number of Sequences: 5004
Number of extensions: 35842
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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