Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0202
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.4
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 2.5
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 2.5
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 3.3
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 28 4.4
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 28 4.4
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 28 4.4
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 5.8
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 28 5.8
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 5.8
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 7.6
03_03_0022 - 13834090-13834128,13835217-13835282,13835364-138354... 27 7.6
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 116 DLKSQLEGFNTSCLRDVDTNEKIVL 190
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = -1
Query: 336 FLLRFDSVFVRKRVLXLSLGVLQLARINFSIPSNKDFWV-FSVATSSADGST 184
F+L DS + R+++L + G+L + N ++P+ F + + A +SAD +
Sbjct: 291 FILISDSAYTREQILAMEKGILNKLQWNLTVPTAYVFIMRYLKAGASADNKS 342
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 78 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 170
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 261 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 344
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = -1
Query: 336 FLLRFDSVFVRKRVLXLSLGVLQLARINFSIPSNKDFWVFSVATSSADGST--------I 181
F+ DS + R+++L + G+L + N +IP+ F + ++SAD +
Sbjct: 179 FIFISDSAYTREQILAMEKGILNKLQWNLTIPTPYVF--IMMLSASADNKSDKENAEALK 236
Query: 180 FSLVSTSRRQLV 145
F +S SR+QL+
Sbjct: 237 FKRLSQSRQQLI 248
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = -1
Query: 336 FLLRFDSVFVRKRVLXLSLGVLQLARINFSIPSNKDFWVFSVATSSADGST--------I 181
F+ DS + R+++L + G+L + N +IP+ F + ++SAD +
Sbjct: 179 FIFISDSAYTREQILAMEKGILNKLQWNLTIPTPYVF--IMMLSASADNKSDKENAEALK 236
Query: 180 FSLVSTSRRQLV 145
F +S SR+QL+
Sbjct: 237 FKRLSQSRQQLI 248
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = -1
Query: 336 FLLRFDSVFVRKRVLXLSLGVLQLARINFSIPSNKDFWVFSVATSSADGST--------I 181
F+ DS + R+++L + G+L + N +IP+ F + ++SAD +
Sbjct: 179 FIFISDSAYTREQILAMEKGILNKLQWNLTIPTPYVF--IMMLSASADNKSDKENAEALK 236
Query: 180 FSLVSTSRRQLV 145
F +S SR+QL+
Sbjct: 237 FKRLSQSRQQLI 248
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 92 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 184
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 288 GEEPASGQRRYRSGEGKEQIPXRHRELR--SH*AEAHG-DVRXEPAP 419
GEEPA R+G G P +HRE + SH + +G ++R P
Sbjct: 6 GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 92 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 184
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 246 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 142
+PSN+ + ++ TSS++GS FSL +++ + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534
>03_03_0022 -
13834090-13834128,13835217-13835282,13835364-13835461,
13836340-13836493,13836742-13836798,13836906-13837028
Length = 178
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 315 VFVRKRVLXLSLGVLQLARINFSIPSNKDFWVFSVA 208
VF+ + + LGV +L + +P+N WVFS+A
Sbjct: 129 VFIALNLAAMGLGVWKLNTLGL-LPTNASDWVFSLA 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,910
Number of Sequences: 37544
Number of extensions: 267105
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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