Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0202
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    66   1e-11
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               36   0.022
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                31   0.48 
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               30   1.5  
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       28   4.5  
SB_45705| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_32869| Best HMM Match : Toxin_7 (HMM E-Value=3.9)                   28   5.9  
SB_21953| Best HMM Match : UME (HMM E-Value=6.1)                       28   5.9  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   28   5.9  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.8  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = +1

Query: 223 PEVF--IRRYREVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTE 396
           PEV   +      D+S+LKH E Q KNPLP KD I  E  + +    ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731

Query: 397 TCXKNPLPXKDVIEQEKSA 453
           T  KNPLP    I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 31/66 (46%), Positives = 37/66 (56%)
 Frame = +1

Query: 247 REVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTETCXKNPLPXK 426
           +  + S+L+H ET+ KN LP KD I  EK    F  G+E F   KLKH ET  KNPLP  
Sbjct: 455 KSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLEKNPLPDA 513

Query: 427 DVIEQE 444
             I  E
Sbjct: 514 QNIRAE 519



 Score = 57.6 bits (133), Expect = 6e-09
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +1

Query: 247 REVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKF--LXGIENFDPTKLKHTETCXKNPLP 420
           +  D S+LKH ET  KNPLP    ++ E        +  + +FD +KLKH E   KNPLP
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703

Query: 421 XKDVIEQEKS 450
            KD I  E +
Sbjct: 704 TKDDITTEST 713



 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +1

Query: 223 PEVFIRRYR--EVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTE 396
           PEV   R    + D+S+LKH ET+ K  +P KD IEAE   ++    +++FD +KLKH  
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEVKSFDHSKLKHVV 579

Query: 397 TCXKNPLPXKDVIEQE 444
           T  KNPLP    + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
 Frame = +1

Query: 262 SQLKHTETQXKNPLPDKDAIEAEK--EKNKFLXGIENFDPTKLKHTETCXKNPLPXKDVI 435
           ++LKH ET  KNPLPD   I AE   E       +  FD +KLKH ET  K  +P KDVI
Sbjct: 497 NKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVI 556

Query: 436 EQE 444
           E E
Sbjct: 557 EAE 559



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 25/63 (39%), Positives = 41/63 (65%)
 Frame = +1

Query: 256 DSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTETCXKNPLPXKDVI 435
           D ++LKH  TQ K+ +P ++ I+ E   ++    +++FD +KLKH ET  KNPLP   V+
Sbjct: 611 DHTKLKHVTTQEKSIMPSQEDIKEEAVDSR--AEVKSFDHSKLKHVETVEKNPLPSAAVL 668

Query: 436 EQE 444
           ++E
Sbjct: 669 KEE 671



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
 Frame = +1

Query: 247 REVDSSQLKHTETQXKNPLPDKDAIEAEK-EKNK-FLXGIENFDPTKLKHTETCXKNPLP 420
           +  D S+LKH  TQ KNPLP    +  E   KNK     + +FD TKLKH  T  K+ +P
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627

Query: 421 XKDVIEQE 444
            ++ I++E
Sbjct: 628 SQEDIKEE 635



 Score = 33.9 bits (74), Expect = 0.090
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = +2

Query: 98  LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 217
           +P+V  D +S++  F+TS L+ V+T EK+V+P+ + +  E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559



 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 358 IENFDPTKLKHTETCXKNPLPXKDVIEQE 444
           +  FD   LKH +T  KN LP  + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442



 Score = 31.5 bits (68), Expect = 0.48
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 98  LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 217
           +PK   D +S++  F+ + L+ V T EK ++PS ED+  E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 35.9 bits (79), Expect = 0.022
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 86  SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 241
           SLK L K+ TDL+S ++G  ++ L ++V+   K+V    +  +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 16  ESSIPFVIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 150
           E S+PF   N   QN  ++    +P R PQG H   + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68  SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 214
           S SD P+  D    A+D+KS  +   T    DV  T++  V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 89   LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 217
            L DL +V  +LKS+ EG    CL D++     +     DV  E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166


>SB_45705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 449

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 23/62 (37%), Positives = 27/62 (43%)
 Frame = +1

Query: 217 EDPEVFIRRYREVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTE 396
           E  +V  RRY E     L    TQ  N + D+  IEAE+ KNK         PT    T 
Sbjct: 82  ESWDVLARRYVE----DLHAKATQLANNVTDQQWIEAEEAKNKVYEEAVQVIPTGTNVT- 136

Query: 397 TC 402
           TC
Sbjct: 137 TC 138


>SB_32869| Best HMM Match : Toxin_7 (HMM E-Value=3.9)
          Length = 910

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = +2

Query: 2   ALQCTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEK 181
           A++  NLL+PS   +   +  C +S  P+L +L   A DL  QL+  N   + D++ N K
Sbjct: 8   AVKINNLLTPSFKCLVGVKQGCMLS--PTLFNL--YAHDLPEQLDTCN---IDDININGK 60

Query: 182 IV--LPSAED-VATEKTQKSLFDGIEKL 256
            +  L  A+D V   K++K L + ++K+
Sbjct: 61  PLSCLLYADDLVIFSKSEKGLQNYLDKV 88


>SB_21953| Best HMM Match : UME (HMM E-Value=6.1)
          Length = 304

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
 Frame = +2

Query: 2   ALQCTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEK 181
           A++  NLL+PS   +   +  C +S  P+L +L   A DL  QL+  N   + D++ N K
Sbjct: 8   AVKINNLLTPSFKCLVGVKQGCMLS--PTLFNL--YAHDLPEQLDTCN---IDDININGK 60

Query: 182 IV--LPSAED-VATEKTQKSLFDGIEKL 256
            +  L  A+D V   K++K L + ++K+
Sbjct: 61  PLSCLLYADDLVIFSKSEKGLQNYLDKV 88


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 258 FEPAEAHRDSGEEPASGQRRYRSGEG 335
           FEP E H DSG+E       Y   EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = +1

Query: 256 DSSQLKHTETQXKNPLPDKDAI--EAEKEKNKFLXGIENF--DPTKLKHTETCXKNPLPX 423
           D + L H     +  +P+ + I  +  + +++ + G EN   D    ++TE C +NP   
Sbjct: 294 DQNLLCHGHDMLQRDVPNSEGILQKPSQREDEVIRGRENILRDVKAYRNTENCVENPQAP 353

Query: 424 KDVIEQEKSA*TTXL*QXLAN 486
            D I  + +A  + + Q + N
Sbjct: 354 GDEIMLDFAAVISEMLQKVEN 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,989
Number of Sequences: 59808
Number of extensions: 286727
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)