Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0202
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 68  SVSDTPSLKDLPKVATDLKS 127
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +1

Query: 223 PEVFIRRYREVDSSQLKHTETQXKNPLPDKDAIEAEKEKNKFLXGIENFDPTKLKHTETC 402
           P+V  +RY++V+ SQ+    +  K+ + +       K K+     IEN   T+   + T 
Sbjct: 181 PDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKSS---TIENESETESNASSTK 237

Query: 403 XK 408
            K
Sbjct: 238 TK 239


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 476 YSQMYLASIAXXNIDVSQI 532
           Y+ + L  +   N+DVSQ+
Sbjct: 457 YNDLILPGVTIQNVDVSQL 475


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 116 DLKSQLEGFNTSCLRDVDTNEKIV 187
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 538 QIDLTYINIXXGDTSEI 488
           QIDL +IN   GD  EI
Sbjct: 172 QIDLKHINQNMGDKVEI 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,623
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)