Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0201
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 180 2e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 1e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 96 3e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 2e-20
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 5e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 51 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.087
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.3
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 180 bits (437), Expect = 2e-46
Identities = 80/90 (88%), Positives = 84/90 (93%)
Frame = +3
Query: 243 GTEGSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 422
G + SYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 423 APLNPKANREKMTQIMFETFNTPAMYVAIK 512
APLNPK+NREKMTQI+FETFN PA YVAI+
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Score = 101 bits (242), Expect = 7e-23
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = +1
Query: 106 DEEVAALVVDNGSGMCKAGFAEDDAPRAVFPSIVGRPRHQGVMVGMGQKD 255
+EE+AALV+DNGSGMCKAGFA DDAPRAVFPSIVGRPRH G+MVGMGQKD
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKD 51
Score = 31.9 bits (69), Expect = 0.066
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 509 QAVLSLYASGRXTGIV 556
QAVLSLYASGR TGIV
Sbjct: 137 QAVLSLYASGRTTGIV 152
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.5 bits (232), Expect = 1e-21
Identities = 39/84 (46%), Positives = 63/84 (75%)
Frame = +3
Query: 261 VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 440
VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP
Sbjct: 54 VGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPV 113
Query: 441 ANREKMTQIMFETFNTPAMYVAIK 512
ANREKM + MFE + +YVAI+
Sbjct: 114 ANREKMCETMFERYGFGGVYVAIQ 137
Score = 49.2 bits (112), Expect = 4e-07
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +1
Query: 112 EVAALVVDNGSGMCKAGFAEDDAPRAVFPSIVGRP 216
E A +V+DNG+G K G+A+D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 509 QAVLSLYASGRXTGIV 556
QAVLSLYA G +G+V
Sbjct: 137 QAVLSLYAQGLSSGVV 152
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 96.3 bits (229), Expect = 3e-21
Identities = 41/87 (47%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Frame = +3
Query: 258 YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLN 434
+VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 57 FVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLA 116
Query: 435 PKANREKMTQIMFETFNTPAMYVAIKP 515
N+EK+ + +ET N PA+ +++P
Sbjct: 117 NIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/45 (53%), Positives = 32/45 (71%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAEDDAPRAVFPSIVGRPRHQGVMVGMGQKDL 258
+ +DNGSG KAGFA DD P+ +FP+ VGR +H+ VM QKD+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDM 56
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2
Query: 509 QAVLSLYASGRXTGIV 556
Q VL+LYAS R TGIV
Sbjct: 142 QPVLALYASARTTGIV 157
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 93.5 bits (222), Expect = 2e-20
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +3
Query: 258 YVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 434
++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 435 PKANREKMTQIMFETFNTPAMYVAIK 512
P NRE +IMFE+FN +Y+A++
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQ 160
Score = 37.5 bits (83), Expect = 0.001
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAEDDAPRAVFPSIV 207
+++DNG+G K G+A +DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.5 bits (145), Expect = 4e-11
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +3
Query: 294 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 473
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 474 ETFNTPAMYVA 506
E+ PA Y+A
Sbjct: 123 ESLRCPATYLA 133
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 109 EEVAALVVDNGSGMCKAGFAEDDAPRAVFPSIVG 210
+EV+A+V+D GS + GF+ +D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 62.1 bits (144), Expect = 5e-11
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = +3
Query: 228 RDGRYGTEGSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 404
RD + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 405 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 509
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 32.7 bits (71), Expect = 0.038
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 124 LVVDNGSGMCKAGFAEDDAPRAVFPSIVGRPR 219
LV+DNGS +AG+ + P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 258 YVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 431
YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 432 NPKANREKMTQIMFETFNTPAMYV 503
NP++ R+++ + FE + PA Y+
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYL 135
Score = 33.5 bits (73), Expect = 0.022
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 109 EEVAALVVDNGSGMCKAGFAEDDAPRAVFPSIVG 210
EE+ +LV+D GS + G+A +++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 309 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 476
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 477 TFNTPAMYVAIKP 515
P +A +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.087
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 369 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 491
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 411 LLTEAPLNPKANREKMTQIMFETFN 485
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 255 ILLSHTDHHALMAGPSHDRGEHGARSIIFCETGLAHTG 142
+LL D + + G +DR + + + ++C L H+G
Sbjct: 230 LLLEEWDRYLMQNGSENDRPDSYSSTQLYCVLCLDHSG 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,342
Number of Sequences: 5004
Number of extensions: 50744
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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