Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0200
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    26   3.2  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    25   7.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   9.8  

>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 420 GVSMYVRRSLVALVLATPKSLLAKHWYSPSSEALVWLNTREPASIVV 280
           G  +Y  + L A +   PK L+ +H   P +   V +  +   SIVV
Sbjct: 33  GSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIPQKSIFSIVV 79


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 385 PCAGDPKVAFGEALVLAFVRSFGLAEHKRASVDSGERV 272
           PC  + K+ F E  +  FV ++     +   VDS  RV
Sbjct: 108 PCEAEVKLQFNEGGIFNFVEAWNRLIQRFQEVDSVSRV 145


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 350 FAKSDFGVASTRATKLRRTYIETPAFEEKKVTVVEGKPFELRCPVPXGYPKP 505
           + KS +G  S   TK R + IE    +E    V++G PF+   P P   P P
Sbjct: 770 YRKSYYGRFSITDTK-RFSKIENMRIKE----VIDGNPFKAPPPAPLPPPAP 816


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,332
Number of Sequences: 5004
Number of extensions: 35047
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)