Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0199
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    27   1.3  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    27   2.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    25   5.4  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.5  

>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 232 VFDTTVVSLCGALQPRGLSLSEQYLGRCLLENGNLVSGIN---GLPRS 98
           VF+TT+  L G L    LS  + YL R +     L++  N   GLPRS
Sbjct: 128 VFETTIRILGGLLSSYHLSQDKLYLDRAVDLADRLLAAYNTSTGLPRS 175


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +1

Query: 163 IVQRGTGHEAGVRHRGRRQXCRILVAKRRHAFSVGLDTLTTIDAGSLVFSQTKASDEGEX 342
           IV+  T  + G++HRG    C I+ +K +  F+  + T   ++      ++  A  E + 
Sbjct: 673 IVRMLTDQDEGIQHRGLVCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQAALKELQH 732

Query: 343 QCFAKSD 363
           +     D
Sbjct: 733 EALVMID 739


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 223 TTVVSLCGALQPRGLSLSEQYLGRCLLE 140
           T + S CG L P+ + L+E+Y    L E
Sbjct: 38  TKIPSECGLLTPKEIELTEKYDATALAE 65


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 228 STXLSSPSVAHSSLVACPSLNNTSAGAS 145
           ST + S S+  S  +  PSL  TSA A+
Sbjct: 333 STGIRSSSIPSSGSIRSPSLTTTSAQAT 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,012
Number of Sequences: 5004
Number of extensions: 38505
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)