Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0199
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0283 + 16241231-16241625,16241774-16241783                       29   3.1  
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133...    28   4.1  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    28   5.5  
02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660     28   5.5  
03_06_0570 - 34794678-34795115,34795339-34795920,34796008-347961...    27   7.2  

>07_03_0283 + 16241231-16241625,16241774-16241783
          Length = 134

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 207 SVAHSSLVACPSLNNTSAGASLRTGTLSPELTGC 106
           +VA  ++VAC +  ++S+ + L  GT++  L+GC
Sbjct: 11  AVAAMAVVACFAATSSSSSSQLHCGTVTSLLSGC 44


>11_06_0653 +
           25911162-25911272,25911648-25911694,25912877-25913355,
           25914089-25914249,25914324-25914519,25914745-25914807,
           25914898-25915047,25915148-25915494
          Length = 517

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -3

Query: 315 LAEHKRASVDS---GERV*TDAKSMPSFRHEYSTXLSSPSVAHSSLVACPSLNNTSAGAS 145
           LAE ++A ++    G+    +A + P    E+ST LSS + AH++ +    L+  S   S
Sbjct: 421 LAELEKALLEDESWGDFDFNEAWANPYSAVEHSTGLSSVNGAHNNNINHGGLSAASEAGS 480

Query: 144 LRTGTLSPELT 112
           +  G LSP ++
Sbjct: 481 VSYGGLSPPVS 491


>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 228  STXLSSPSVAHSSLVACPSLNNTSAGA--SLRTGTLSPELTGCPVV 97
            +T LS PS+    L+A PSLN  S  +  +L +     ++  CPV+
Sbjct: 1021 ATELSIPSLEELVLIALPSLNTCSCTSIRNLNSSLKVLKIKNCPVL 1066


>02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660
          Length = 383

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 193 QPRGLSLSEQYLGRCLLENGNLVSGINGLPRSVN 92
           QP+  + S     RC+++  ++ + IN  PRS+N
Sbjct: 313 QPQKCNSSSSMTNRCVVDMPDVANNINSGPRSIN 346


>03_06_0570 -
           34794678-34795115,34795339-34795920,34796008-34796146,
           34796261-34796402,34796504-34796621,34796713-34796820,
           34796894-34796968,34797774-34798003,34798086-34798388,
           34798949-34799130,34800288-34800371,34800799-34801391
          Length = 997

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 267 TDAKSMPSFRHEYSTXLSSPSVAHSSLVACPSLNNTSAGASLRT 136
           TD+ + PS+ H+ ST     +  +S   +  SL++++  A  RT
Sbjct: 424 TDSPNCPSWMHQDSTQSPPQTSGNSDSTSAQSLSSSNGDAQCRT 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,923,958
Number of Sequences: 37544
Number of extensions: 280734
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)