Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0198
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 146 2e-36
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 143 1e-35
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 92 4e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 7e-11
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 1.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 2.4
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 3.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 4.2
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 5.6
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 5.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 25 7.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 9.7
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 25 9.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 146 bits (353), Expect = 2e-36
Identities = 62/94 (65%), Positives = 74/94 (78%)
Frame = +1
Query: 226 FQHFLQRDRSGKHVPRAVFVDLEPTXVDXVRTGTYRQLFHPEQXINGKEDAANNYARGHY 405
F F GK+VPR+++VDLEP +D VRTG YR LFHPEQ I GKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 406 TIGKXIVDLVLDRIRXLADQCTGLQGFLIFHSFG 507
T+GK +VD V D+IR +AD C+GLQGFL+FHSFG
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFG 142
Score = 93.9 bits (223), Expect = 1e-20
Identities = 41/63 (65%), Positives = 45/63 (71%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGVAS 262
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 TYP 271
P
Sbjct: 61 YVP 63
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 510 GTGSGFTSLLMER 548
GTGSGF +LL+ER
Sbjct: 144 GTGSGFGALLLER 156
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 143 bits (347), Expect = 1e-35
Identities = 60/94 (63%), Positives = 74/94 (78%)
Frame = +1
Query: 226 FQHFLQRDRSGKHVPRAVFVDLEPTXVDXVRTGTYRQLFHPEQXINGKEDAANNYARGHY 405
F F GK VPR+++VDLEP +D VRTG Y+ LFHPEQ + GKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 406 TIGKXIVDLVLDRIRXLADQCTGLQGFLIFHSFG 507
T+GK ++D VL+RIR +AD C+GLQGFL+FHSFG
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFG 146
Score = 87.8 bits (208), Expect = 9e-19
Identities = 45/68 (66%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 247
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 248 TGVASTYP 271
TG P
Sbjct: 60 TGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 92.3 bits (219), Expect = 4e-20
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +1
Query: 256 GKHVPRAVFVDLEPTXVDXVRTGTYRQLFHPEQXINGKEDAANNYARGHYTIGKXIVDLV 435
GK+VPRAV VDLEP +D V++G + LF P+ I G+ A N +A+GHYT G + D V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 436 LDRIRXLADQCTGLQGFLIFHSFG 507
LD +R A+ C LQGF + HS G
Sbjct: 117 LDVVRREAEACDALQGFQLTHSLG 140
Score = 35.1 bits (77), Expect = 0.007
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGVAS 262
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 263 TYP 271
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 61.7 bits (143), Expect = 7e-11
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Frame = +1
Query: 235 FLQRDRSGKHVPRAVFVDLEPTXVDXVRTGTYRQLFHPEQXINGKE--DAANNYARGHYT 408
F Q D + +++PRA+ +DLEP V+ + + TY L++PE + K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 409 IGKXIVDLVLDRIRXLADQCTGLQGFLIFHSF--GEVPALGS 528
+ I + ++D I AD L+GF + HS G LGS
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGS 151
Score = 48.8 bits (111), Expect = 5e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 250
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 318 ADXINXSRFKIDEDSTGYVLATPVSLKKVLKESSPPPM 205
AD IN SR+ ID S +T + L P P+
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQPI 492
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 328 YRQLFHPEQXING--KEDAANNYARGHYTIGKXIVDLV 435
Y + E+ IN +E ANN+ RGH I K D +
Sbjct: 584 YESMQQREEKINSWERERKANNFFRGHIEIDKKTKDFL 621
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 291 KIDEDSTGYVLATPVSLKKVLKESSPPPMVLSVGIW 184
KID GY T S K + E + P + G+W
Sbjct: 227 KIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 181 WPDAHRQDHRGWRRFFQHFLQR 246
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 72 LKSKCVSAYLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 194
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 285 DEDSTGYVLATPVSLKKVLKESSPPPMVLSVGIWPSG 175
++D T Y L P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKY-LGPPIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 162 STASSLMARCPQTRPSGVETILSTLSSARP 251
ST SSL + ++PS T ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 315 DXINXSRFKIDEDSTGYVLATPVSLKKVLKESSPPPMVLSV 193
D I+ S+ K ++ Y+ P KKV++ S+P +VL +
Sbjct: 120 DTISFSKPKTVDNYPEYIQHLPGFTKKVVQNSNPEILVLCI 160
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 184 PDAHRQDHRGWRRFFQHFLQRDRSGKHVPRAVFVDLEP 297
P+ H + G F + F +DR G V VFV+ P
Sbjct: 22 PEYHNERSLGDSHFLRTFRMQDRKGYDVLIKVFVNKLP 59
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 109 NVYRYALTHFDLSFFLCLNVEL 44
NV RY L+HFD LC+ EL
Sbjct: 579 NVIRY-LSHFDFRGHLCIVTEL 599
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,314
Number of Sequences: 5004
Number of extensions: 43978
Number of successful extensions: 132
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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