Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0197
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 29 0.61
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 3.3
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 26 4.3
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 26 4.3
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 25 5.7
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 5.7
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 5.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.5
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 25 7.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 10.0
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 28.7 bits (61), Expect = 0.61
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 301 DQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKT 462
+++ I S+L + + Y + + +AD A+ QP GD L +W ++ T
Sbjct: 857 EEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGDHLTLLHIWNEWVDT 910
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 455 LYLTHIVYLFSLSPTGCT 402
+Y H+VY+ SLSP C+
Sbjct: 1399 VYAAHLVYILSLSPDVCS 1416
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -3
Query: 445 PTSCICLAYRRPAVPSAIWPCRHPALFLC-RYI*NRSYP 332
P CICL P + PC H + C R N S+P
Sbjct: 190 PECCICLMPVLPCQALFVAPCSHSYHYKCIRPTLNESHP 228
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 4.3
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +1
Query: 178 GQDLPVHVSGLPALRYFYKDRAGHNGTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYI 357
G D P+ L Y K ++ N +K+T N +D+ DI+ V + K+I
Sbjct: 8 GSDAPLEKVCSALLEYESKRKSSENIDSESKKT----NLLEDEQDDIEPVWLQLATLKFI 63
Query: 358 G 360
G
Sbjct: 64 G 64
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 271 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIG-TETMQDADTAK 393
ET LQ N+T L +++ V PD +K IG T Q + AK
Sbjct: 26 ETQLQENTTV--LNELEKVAPDSNIYKQIGPTLVKQSHEEAK 65
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 527 AQERIETFISYRTGMGTESPFKVFLYLTHIVYLFSLSP 414
A I T + R + +S + L+H+VYL S SP
Sbjct: 14 ASVTINTVLYDRRALDCDSEMSLMNSLSHLVYLTSTSP 51
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -3
Query: 163 IDSRFAVLTVVPSIEWLMQFSIGYI*ESLYCVY----WTPLWWRPFID 32
I S VLT+ P I W +Q +I Y VY W+ + W D
Sbjct: 164 IGSALFVLTIFPLIYWYIQHKFKHI-PGAYTVYAFFEWSLILWDILFD 210
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 298 QDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNK 432
QD+L+D+ + P + K GT+ D ++W V D L +
Sbjct: 479 QDKLRDLAAKHPYFEEVKRYGTDANGDPLWSEWFYNPDVDDDLER 523
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 53 QWSPVYTVKGLL 88
QWSPVYT+K L
Sbjct: 96 QWSPVYTMKSAL 107
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 83 LLNIPYAELHEPFYAWYDSKNSKSRIDY 166
L + P +ELH W+ SK S + Y
Sbjct: 704 LSSSPLSELHPQLREWFSSKQSVYSLQY 731
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,856
Number of Sequences: 5004
Number of extensions: 52181
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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