Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0197
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1673 - 35250564-35251379,35251507-35251749                       31   0.47 
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714...    31   0.82 
12_02_0628 + 21357876-21359921                                         30   1.4  
04_04_1674 - 35258000-35258779,35258960-35259097                       29   3.3  
10_07_0152 + 13439178-13439517,13440072-13440229,13440431-134404...    28   4.4  
04_04_1675 - 35280705-35281493,35281544-35281795                       27   7.7  
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    27   7.7  
01_01_0278 - 2281536-2281977,2282523-2282926                           27   7.7  

>04_04_1673 - 35250564-35251379,35251507-35251749
          Length = 352

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 226 FYKDRAGHNGTEMNKETCLQVNSTQDQLQDIQSVLPDMTD-FKYIGTETMQDADTAKWQM 402
           F++DRAG      +K+  L      ++LQ++  + PD  D   YI   T Q   T+   +
Sbjct: 215 FFRDRAGRQDDTFSKKLKLNCTKDPNRLQELDVITPDAFDNAYYIALTTGQGVFTSDMAL 274

Query: 403 VQ 408
           ++
Sbjct: 275 MK 276


>02_05_0942 +
           32970537-32970581,32971059-32971113,32971300-32971417,
           32971567-32971615,32971637-32971723,32971890-32971970,
           32972074-32972181,32972432-32972503,32973218-32973250
          Length = 215

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 98  YAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVTTEL 259
           + E   P   +Y++K+   +ID    + + ++   A++ PY  +  ++ VTT L
Sbjct: 162 FVESSLPVIEYYNAKDKVKKIDAAKPIPEVFEDVKAIFAPYAPNALLSGVTTNL 215


>12_02_0628 + 21357876-21359921
          Length = 681

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 328 LPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKTLKGDSVPIPVRYEM 504
           L   T  KY+      +A+ A+WQM Q V D       + K+ +  + + V +P R ++
Sbjct: 362 LEGYTTCKYLNVVWDNEANAARWQMTQ-VSDSFPSEEEFKKWLQVAEKNGVRVPTRQDV 419


>04_04_1674 - 35258000-35258779,35258960-35259097
          Length = 305

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 226 FYKDRAGHNGTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKY 354
           F++DRA       +K+  +      ++LQ++  V PD  D  Y
Sbjct: 178 FFRDRAARQDDTFSKKLAVNCTKDPNRLQNLDVVTPDAFDNAY 220


>10_07_0152 +
           13439178-13439517,13440072-13440229,13440431-13440477,
           13441115-13441178,13441600-13442237,13442328-13442562
          Length = 493

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 35  DKGSPPQWSPVYTVKGLLNIPYAELHEP 118
           D GS  +W P+    G +N P   LH P
Sbjct: 391 DSGSTSEWRPLIKKYGYVNCPTVRLHIP 418


>04_04_1675 - 35280705-35281493,35281544-35281795
          Length = 346

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 226 FYKDRAGHNGTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKY 354
           F+ DRA       +K+  L      ++LQ++  + PD  D  Y
Sbjct: 216 FFDDRARRQDDTFSKKLALNCTKDPNRLQNLDVITPDAFDNAY 258


>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 83  LLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPVT 250
           +L    + L  PF+ W ++    SR+ Y G M+  + F  A    +  S+KI   T
Sbjct: 426 MLKATASRLFGPFFDWIETWEMISRLKYLGTMLFLHNFQQA----FTWSLKIVTAT 477


>01_01_0278 - 2281536-2281977,2282523-2282926
          Length = 281

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +1

Query: 286 VNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKY 435
           +N  +D   D+Q +   M  F   G      A T +W     VGD  N Y
Sbjct: 54  MNHFRDLELDVQQIENGMVPFPVYGAAAAGGAFTLQWDGAHGVGDFRNAY 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,387,829
Number of Sequences: 37544
Number of extensions: 347560
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)