Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0197
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 6e-15
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40) 54 1e-07
SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 33 0.16
SB_54730| Best HMM Match : RdRP (HMM E-Value=0) 31 0.64
SB_1137| Best HMM Match : CC (HMM E-Value=2) 31 0.64
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 28 4.5
SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07) 28 4.5
SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13) 28 4.5
SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11) 27 7.9
SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12) 27 7.9
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 77.8 bits (183), Expect = 6e-15
Identities = 33/71 (46%), Positives = 46/71 (64%)
Frame = +2
Query: 44 SPPQWSPVYTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYG 223
+PP W YT+ G+L +PYAE+ EPF AW+D +SRIDYYGGM T+Q + G
Sbjct: 337 TPPTWPQEYTLTGVLRLPYAEIEEPFQAWFDGGRKRSRIDYYGGMDSTFQRGDIL--TAG 394
Query: 224 TSIKIAPVTTE 256
+ +I P++TE
Sbjct: 395 ANFRICPMSTE 405
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/83 (36%), Positives = 40/83 (48%)
Frame = +1
Query: 256 TEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKY 435
T++N +C Q N T QSVLPD+ F ++G T D + W+ VG K NKY
Sbjct: 406 TKLNVRSCFQTNGTSASPVGPQSVLPDLAKFSFVGNSTYGDVKCSIWEYKLTVGHKRNKY 465
Query: 436 TMWVKYKKTLKGDSVPIPVRYEM 504
TM+ P P+ YEM
Sbjct: 466 TMYTSM------HDPPAPIHYEM 482
Score = 30.7 bits (66), Expect = 0.84
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +3
Query: 510 FNSLLGSHYDHYYLDY 557
F+ L+GSHYD Y LDY
Sbjct: 485 FDDLIGSHYDQYELDY 500
>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/64 (45%), Positives = 38/64 (59%)
Frame = +2
Query: 68 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAPV 247
Y G+L++PY ++ EPF WY + SRIDYYGGM +TYQ YG + KI P
Sbjct: 39 YHATGVLSLPYGDIKEPFEVWYSGLHGMSRIDYYGGMDRTYQ--RGDLGKYGYACKIVPE 96
Query: 248 TTEL 259
+EL
Sbjct: 97 FSEL 100
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +2
Query: 68 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQ 193
Y G+L +P +E++EPF W+ +++SRIDYYGG VKTYQ
Sbjct: 902 YHATGVLRLPTSEVNEPFEIWFSRPHNQSRIDYYGGDVKTYQ 943
>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = +2
Query: 38 KGSPPQWSPV-----YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTS 202
+ +PP P Y G L +P++++ EPF W+ +++++SRIDYY G +T+Q
Sbjct: 37 RSAPPPMKPFHFPRNYHATGKLQLPHSKIEEPFEVWFSAQHNRSRIDYYYGTDRTFQ--R 94
Query: 203 AVYPPYGTSIKIAPVTTE 256
A P+G + KI P+ T+
Sbjct: 95 ADVGPHGEAFKIVPIYTD 112
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/77 (36%), Positives = 39/77 (50%)
Frame = +1
Query: 277 CLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYK 456
C + T+ +Q ++P+MTDFK+ G E A TAKW+ +N +T+WV
Sbjct: 120 CWHLEGTERTPIVVQPIVPNMTDFKFAGYEVYHGASTAKWEYRYLAFGLMNAHTIWVTTA 179
Query: 457 KTLKGDSVPIPVRYEMK 507
P PVRYEMK
Sbjct: 180 ------DPPRPVRYEMK 190
>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
Length = 1198
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/59 (42%), Positives = 34/59 (57%)
Frame = +2
Query: 68 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTSAVYPPYGTSIKIAP 244
Y G L++PY + EPF +WY + SRIDYY GM KT+Q + YG +K+ P
Sbjct: 1020 YHAIGTLHLPYDNIREPFESWYARDYNMSRIDYYYGMDKTFQRGDLM--DYGVLVKVVP 1076
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = +2
Query: 68 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGGMV 181
Y V+G L++PY E+ EPF AWY + SRIDYY G V
Sbjct: 878 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYGKV 915
Score = 35.1 bits (77), Expect = 0.039
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 319 QSVLP-DMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKK 459
QSVLP + FK+IG E T K+Q + K N YT W+ K
Sbjct: 1106 QSVLPAHLEHFKFIGEEIRSGMPTFKYQRNTTIFHKKNSYTFWMTKAK 1153
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 510 FNSLLGSHYDHYYLDY 557
+++LL S YDHY +DY
Sbjct: 1165 YDTLLNSFYDHYVMDY 1180
>SB_39190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +2
Query: 68 YTVKGLLNIPYAELHEPFYAWYDSKNSKSRIDYYGG 175
Y V+G L++PY E+ EPF AWY + SRIDYY G
Sbjct: 72 YRVQGTLSLPYDEIVEPFEAWYAGDYNMSRIDYYYG 107
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = -1
Query: 477 RIPFQSLLVFNPHRVFV*LIADRLYHL 397
+I F S +VF PHR ++ L+ DRLYHL
Sbjct: 525 QIVFPSHIVFTPHRSYL-LLTDRLYHL 550
>SB_54730| Best HMM Match : RdRP (HMM E-Value=0)
Length = 658
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 244 GHNGTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGT 363
GH+ +++ +TC +N T ++I S+L TDF I T
Sbjct: 103 GHSNSQLKDKTCFLMNGTH---EEIHSLLAQFTDFSKIKT 139
>SB_1137| Best HMM Match : CC (HMM E-Value=2)
Length = 410
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 319 QSVLP-DMTDFKYIGTETMQDADTAKWQMVQPVGDKLNKYTMWVKYKKTLKGDSVPIPVR 495
QSV+P ++T+FK + ET + + ++Q +K N Y +W+ K + P+R
Sbjct: 232 QSVVPTNLTEFKMVAIETHRGHPSFRFQRKFSELNKTNTYILWITTHKPHR------PLR 285
Query: 496 YEM 504
+EM
Sbjct: 286 FEM 288
Score = 29.1 bits (62), Expect = 2.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 510 FNSLLGSHYDHYYLDY 557
++ +L SHYDHY +DY
Sbjct: 291 YDDMLTSHYDHYLIDY 306
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 328 LPDMTDFKYIGTET-MQDADTAKWQMVQPVGDKLN--KYTMWVKYKKTLKGDSVPIPVRY 498
LP +D K+ T Q ++ KW P N T+ V+Y+ G S+ +PVRY
Sbjct: 186 LPSPSDIKWSVPYTPRQISNDIKWSDPYPPRQISNGRSLTLSVRYQMISNGRSLTLPVRY 245
Query: 499 EM 504
+M
Sbjct: 246 QM 247
>SB_56601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 29.5 bits (63), Expect = 1.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 510 FNSLLGSHYDHYYLDY 557
+++LL S+YDHY LDY
Sbjct: 48 YDTLLSSYYDHYILDY 63
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 35 DKGSPPQWSPVYTVKGLLNI 94
DKGSPPQ+S + + +LNI
Sbjct: 451 DKGSPPQYSEITVIVKVLNI 470
>SB_22092| Best HMM Match : WD40 (HMM E-Value=7.2e-07)
Length = 338
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 131 YDSKNSKSRIDYYGGMVKTYQF-TSAVYPPYGTSIKIAPVTTEL 259
Y+ + R + YG ++ + TS Y PYGTS++ P T L
Sbjct: 294 YNPYGTSLRYNPYGTSLRYNPYGTSLRYSPYGTSLRYNPYGTSL 337
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 155 RIDYYGGMVKTYQF-TSAVYPPYGTSIKIAPVTTEL 259
R + YG ++ + TS Y PYGTS++ +P T L
Sbjct: 293 RYNPYGTSLRYNPYGTSLRYNPYGTSLRYSPYGTSL 328
>SB_41915| Best HMM Match : F5_F8_type_C (HMM E-Value=9.1e-13)
Length = 317
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 QVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQM--VQPVGDKLNKYTMWV 447
Q T + QD +S ++D KYIG + + T +W + +P +L+ + WV
Sbjct: 153 QEGYTGELCQDCKSPPIGISDEKYIGNSRIAGSSTGQWVLDYFEPYKGRLHGPSSWV 209
>SB_50663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 95 PYAELHEPFYAWYDSKNSKSRIDYYGGMVKTYQFTS---AVYPPYGTSIKIA 241
PY+ +H P Y YD++ + YYG + Q + V PPY IA
Sbjct: 21 PYSSVHFPVYGQYDARQER----YYGPPLPRSQHPTRQDMVKPPYSYIALIA 68
>SB_18521| Best HMM Match : ig (HMM E-Value=7.5e-11)
Length = 1033
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 347 LNISAQKQCRMPTRPNGRWYSRSAIS 424
L+ S++ CR PTRP R++S +A+S
Sbjct: 34 LDESSRDVCRFPTRPLIRYFSFTALS 59
>SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)
Length = 366
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 537 RSGSPGAN*NFHLISDRYGHRIPFQSLLVFN 445
R G PG N+ + S R G+ +P++ ++ F+
Sbjct: 238 RHGMPGTRYNYLMASARPGYNLPYRDIVKFD 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,005,099
Number of Sequences: 59808
Number of extensions: 404042
Number of successful extensions: 1301
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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