Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0197
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    28   4.0  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AC098856-7|AAL27253.2|  155|Caenorhabditis elegans Hypothetical ...    28   5.2  
AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical ...    27   6.9  

>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -2

Query: 401 ICHLAVS--ASCIVSVPIYLKSVISGSTDWMSWS*SCVELTCRH---VSLFISV 255
           + +LAV+  A+ I ++P ++  V  GSTDW+  S  C    CR+   V LF S+
Sbjct: 57  LLNLAVADLANLIFTIPEWIPPVFFGSTDWLFPSFLCP--VCRYLECVFLFASI 108


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
            protein 1 protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -1

Query: 381  GILHCFCADIFKIGHIR*H*LDVLELILRRIDLQARLLVHLSSVVTGAI 235
            G+L    A I +I     H  D ++ +LRR+D++   +  LS+++T A+
Sbjct: 1180 GLLDYDTAKIGQINLALYHFSDSIQPVLRRLDIKPHWMFALSNLITSAV 1228


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 271 ETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAK 393
           +TCLQ  S+Q++   +Q V+P   +F   G+ + + ++  +
Sbjct: 318 KTCLQAESSQNKSSSMQPVMPVKIEFLLTGSVSQKISEAER 358


>AC098856-7|AAL27253.2|  155|Caenorhabditis elegans Hypothetical
           protein Y37F4.8 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 521 ERIETFISYRTGMGTESPFKVFLYLTHIVYLFSLSPTGCTIC 396
           E I   + + T M   S   VF+ L  I    +L P GCT C
Sbjct: 24  ENIPFRVKHTTNMTFSSTLNVFVLLALISASQALPPKGCTSC 65


>AF038612-3|AAB92045.2|  432|Caenorhabditis elegans Hypothetical
           protein F13B6.3 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 467 FKVFLYLTHIVYLFSLSPTGCTICHLAVSASCIVSV 360
           + V L       LFS SP+G TI ++ V A  + S+
Sbjct: 123 YMVELVKDRFAVLFSKSPSGSTITNITVDADTVFSI 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,743,394
Number of Sequences: 27780
Number of extensions: 293062
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)