Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0197
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61390.1 68418.m07702 exonuclease family protein contains exo...    33   0.17 
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui...    32   0.23 
At5g07710.1 68418.m00884 exonuclease family protein contains exo...    31   0.39 
At5g22350.1 68418.m02607 expressed protein                             29   2.8  
At1g33590.1 68414.m04158 disease resistance protein-related / LR...    29   2.8  
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea...    28   4.9  
At3g50920.1 68416.m05575 phosphatidic acid phosphatase-related /...    27   6.4  
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR...    27   6.4  
At2g26380.1 68415.m03166 disease resistance protein-related / LR...    27   6.4  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    27   8.5  

>At5g61390.1 68418.m07702 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 487

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 32  VDKGSPPQWSP-VYTVKGLLNIPYAELHEP 118
           VD GS   W+P V  +KG LN P A +H P
Sbjct: 383 VDSGSGSDWNPLVIPMKGFLNCPTARIHIP 412


>At3g53090.1 68416.m05851 HECT-domain-containing protein /
           ubiquitin-transferase family protein / IQ
           calmodulin-binding motif-containing protein contains
           Pfam profiles PF00632: HECT-domain
           (ubiquitin-transferase), PF00612: IQ calmodulin-binding
           motif
          Length = 1142

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +1

Query: 256 TEMN--KETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDADTAKWQMVQPVGD-KL 426
           TE N  +E    V      L  I  VL D   +K I  E  +DA+TAK  ++Q +G  K 
Sbjct: 165 TECNYSQERIKDVIGVNALLLRILIVLTDPKSWKIITNENFEDAETAKKIIIQFIGSCKS 224

Query: 427 NKYTMWVKYKKTL 465
             Y+   +Y KTL
Sbjct: 225 GYYSAVRRYIKTL 237


>At5g07710.1 68418.m00884 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 468

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 32  VDKGSPPQWSPVYT-VKGLLNIPYAELH 112
           VD GS  +W+PV   +KG +N P A +H
Sbjct: 365 VDSGSTSEWNPVVNPMKGFVNYPNARIH 392


>At5g22350.1 68418.m02607 expressed protein
          Length = 427

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 17  FASGYVDKGSPPQWSPVYTVKGLLNIPYAELHEPFYAWYD 136
           F   ++    PPQ   V T   L  I YA L +   AW+D
Sbjct: 210 FMRSWITPREPPQDHVVLTTGALHQIDYASLRKAASAWHD 249


>At1g33590.1 68414.m04158 disease resistance protein-related / LRR
           protein-related contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 477

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 473 SPFKVFLYLTHIVYLFSLSPTGCTICH 393
           S F +F++ T +++L  L+PTG   CH
Sbjct: 3   SSFTLFIF-TFVIFLQCLNPTGAATCH 28


>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
           family protein similar to PAK/PLC-interacting protein 1
           (GI:4211689)  {Homo sapiens}
          Length = 1115

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 440 IVYLFSLSPTGCTICHLAVSASCIVSVPIYLKSVISGSTDWMSWS*SCVEL 288
           + YL S   T  +    +   S +VS+ +Y+  VIS    W+S    C+ L
Sbjct: 1   MAYLSSSQSTFISCSENSSLDSILVSINVYILGVISDPEAWISLKQKCITL 51


>At3g50920.1 68416.m05575 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 279

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 169 IVIDSRFAVLTVVPSIEWLMQFSIGYI*ESLYCVYWTPLW 50
           + + S F  L V   +    Q  +G I  SL+C+ W  +W
Sbjct: 198 LALGSYFIRLRVSQKLHTSSQVVVGAIVGSLFCILWYTMW 237


>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
           identical to microtubule organization 1 protein
           GI:14317953 from [Arabidopsis thaliana]
          Length = 1978

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 229 YKDRAGHNGTEMNKETCLQVNSTQDQLQDIQSVLPDMTDFKYIGTETMQDAD 384
           ++DR GH   ++  E  + + S  D + D +   P + DF ++  +T+ D++
Sbjct: 17  WEDRLGHKNWKVRNEANVDLASVFDSITDPKD--PRLRDFGHLFRKTVADSN 66


>At2g26380.1 68415.m03166 disease resistance protein-related / LRR
           protein-related contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-2A
           [Lycopersicon pimpinellifolium] gi|3894389|gb|AAC78594
          Length = 480

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = -2

Query: 467 FKVFLYLTHIVYLFSLSPTGCTICH------LAVSASCIVSVPIYLKSVISGSTDWMSWS 306
           F  F   T +++L  L+PT    CH      L    S I   P  + S     TD  SW+
Sbjct: 6   FHNFFIFTAVIFLRCLNPTAAATCHPDDEAGLLAFKSGITKDPSGILSTWKKGTDCCSWN 65


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 316 CLGADLASN*LAGTSPCSSQFRCDRRDLYRSTVGRVDR 203
           C+ ++LA N +AG S C    RC   +  R    +++R
Sbjct: 296 CIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIER 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,998,956
Number of Sequences: 28952
Number of extensions: 275752
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)