Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0196
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical...    29   2.9  
U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical p...    27   6.7  
AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical...    27   8.9  
AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical...    27   8.9  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF078157-11|AAG24070.1|  401|Caenorhabditis elegans Hypothetical
           protein F25E5.10 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 248 VLGSKGASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHRFD 373
           V GS G  PG  CN  C +   DDI    +  K  YK+ R D
Sbjct: 344 VTGSDGTCPGNPCNGLCVEEDDDDIHIHIRLGK--YKKTRND 383


>U64844-12|AAB18312.4|  417|Caenorhabditis elegans Hypothetical
           protein T22F3.10 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  MQKLIIFALVVLCVGSEAKTFTRCGLVH 104
           M  L  F L + C+G  +  F +CG++H
Sbjct: 309 MLSLSFFILTMCCIGVNSGGFYKCGVLH 336


>AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12c protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYF 363


>AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12b protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYF 363


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 120 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYW 254
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYF 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,976
Number of Sequences: 27780
Number of extensions: 220835
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)