Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0195
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 28 1.1
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.3
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 26 4.3
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 5.7
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 5.7
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 25 5.7
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 25 7.5
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 7.5
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch... 25 7.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 10.0
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 233 RQLQRVPRDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFF 367
+++ RV + + K +V + T DDTV WI ++ +G D P F
Sbjct: 122 KEIYRVLKPNGKLGLVWN-TRDDTVPWIEKVSKILGRYRKDAPSF 165
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 44 PLRAEHVRHLLHPDDLSAH 100
PL+A +V +HP LSAH
Sbjct: 255 PLKAHYVLRSVHPSPLSAH 273
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 86 DLSAHPPRRLPSLQERKRFSHIRKLLLQSFIRRVRRA 196
+L ++ SL+ K RKLLLQS I R+ +A
Sbjct: 678 NLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKA 714
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 195 PEIENAANVYHTLVSCREYHEMIGSTKWWSIGPKMIQFR 311
P+ E N YH L S + G W SI K I++R
Sbjct: 231 PDSEEVQNEYHRLKSSIDEEFAGGPCSWASIFGKDIRYR 269
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -3
Query: 340 TYALGCVDYPRN----CIIFGP---IDHHFVLPIISWYSLQLTRVW*TLAAFSISGSS 188
+YA GCV+Y N C P ID+++ L +S+ +W T S +G S
Sbjct: 163 SYATGCVNYGHNVALTCFENSPKELIDYNYWLSWLSFSKSSPVVLWLTFTRISSAGLS 220
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 208 MLPMFTTPSSAAESTTR*LEVQSGGRL 288
MLP F + SS ++T R + SGG+L
Sbjct: 1 MLPKFRSRSSIIKNTERISNILSGGKL 27
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 111 DFQVFRRGNASHIYGNYYSNPSYDAYEEPEIENAANV---YHTLVSCR 245
D ++ GN + G Y +PSY+ + + N+ V Y+ +V R
Sbjct: 199 DVNIYDHGNNNEFVGRTYIHPSYNYGQFEQFCNSVEVSPAYNRMVDLR 246
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 65 RHLLHPDDLSAHPPRRLPSL 124
RHLLHP +L RLP L
Sbjct: 224 RHLLHPAELQLAATLRLPCL 243
>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 341 ISEYDIPFFNYRVTGLDLRNMK 406
I+E+++P+F Y +T LDL +K
Sbjct: 48 INEFNLPWFIYSLTILDLTVLK 69
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 281 VDWTEDDTVSWIVDTAQSIGISEY-DIPFFNYRVTGL 388
V WT+ D SW ++ Q +GIS++ + RV GL
Sbjct: 318 VAWTDTDIYSWGLNNGQ-LGISDHISVVSTPRRVAGL 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,032
Number of Sequences: 5004
Number of extensions: 49162
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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