Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0195
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994... 29 1.9
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599... 29 2.5
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 29 3.3
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 28 4.4
03_06_0474 - 34184002-34184660,34184755-34184887,34185071-341858... 28 4.4
02_04_0333 + 22096960-22097445,22098508-22098643,22099159-220993... 28 5.8
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 27 7.7
>02_05_0960 +
33097510-33097821,33098846-33099043,33099174-33099446,
33099575-33099677,33100297-33100415,33100968-33101759
Length = 598
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 525 LSEHI-LFSLVWSLSKMLSPIFLEATG 448
L H+ L +L W SK P+FLEATG
Sbjct: 130 LKHHLNLLTLCWHFSKKPFPLFLEATG 156
>08_01_0683 +
5991905-5992055,5993262-5993451,5993701-5993772,
5994016-5994084,5994189-5994260,5994440-5994511,
5994623-5994694,5994777-5994848,5995276-5995347,
5995452-5995526,5995929-5996005,5996417-5996781,
5996872-5997070,5997151-5997309,5997391-5997509,
5997624-5997641,5997701-5997851,5997959-5998190,
5998272-5998422,5998517-5998876
Length = 915
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 60 TCDIYYTQTTSAPTRLDDFQVFRRGNASHIYGNYYSNPSYDAYEE 194
T DI T+ + P+ + ++Q+ R GN S+I NY S + + E
Sbjct: 851 TGDIEMTEMVTKPSYITEWQL-RGGNTSYISSNYSSGSTTGEFRE 894
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 VFRRGNASHIYGNYYSNPSYDAYEEPEIENAANVY-HTLVSCRE 248
VF S I G+ YS+P YD +EP +N++ + LVS E
Sbjct: 340 VFGNLPMSGILGSCYSHPDYDKEKEPHGDNSSTPFADELVSAVE 383
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 VFRRGNASHIYGNYYSNPSYDAYEEPEIENAANVY-HTLVSCRE 248
VF S I G+ YS+P YD +EP +N+ + LVS E
Sbjct: 261 VFGNLPMSGILGSCYSHPDYDKEKEPRGDNSGTPFADELVSAVE 304
>03_06_0474 -
34184002-34184660,34184755-34184887,34185071-34185886,
34186013-34186104,34186710-34186863
Length = 617
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 125 QERKRFSHIRKLLLQSFIRRVRRA*D*KCCQCLPHPRQLQRVPRDDWKYKVVVDWTEDD 301
+E + FS++ +L+ S I K CQ L P + + KY V +W+ D
Sbjct: 455 EEEREFSYVLDILIVSGIHGTAEDQLYKVCQSLDCPAGYDVFEKLEKKYMKVAEWSRSD 513
>02_04_0333 +
22096960-22097445,22098508-22098643,22099159-22099325,
22099447-22099567,22099660-22099760,22099908-22100006,
22100512-22100622,22100709-22100788,22100880-22100949,
22101880-22101965,22102097-22102166,22102250-22102338,
22102448-22102572,22102686-22102766,22102848-22102908,
22103002-22103060,22103134-22103273,22103391-22103480,
22103917-22103976,22104072-22104188
Length = 782
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 47 LRAEHVRHLLHPDDLSAHPPRRLPSLQERKRF 142
LR R LHP HP R SL++R+RF
Sbjct: 23 LRLRRFRLHLHPRPPPPHPQLRSRSLRQRRRF 54
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = +2
Query: 221 LPHP-RQL---QRVPRDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRV--- 379
LP P RQ +++ D K +DW E+D SW +D + + EY++ N +V
Sbjct: 408 LPQPDRQADAERKILDDALDRKPQIDWVEEDISSW-MDKSYTSSNLEYNLLMQNIQVLES 466
Query: 380 --TGLDLRNMKREDFV 421
G DL ++R+ V
Sbjct: 467 SLAGKDLVRLERDILV 482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,871,211
Number of Sequences: 37544
Number of extensions: 318673
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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