Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0194
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    27   1.4  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   3.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   5.6  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   7.4  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   7.4  
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    25   7.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.8  

>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/83 (20%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = -1

Query: 317 LRKPDRALYKPMLLLQRYLRPINTYT-FCIVYNLLNKQTHFFAAVFCCSSDIFVYISLFV 141
           + +P   +++P L+L  +L P++  +   ++Y +++ Q    +  +   S I   +SLF+
Sbjct: 5   ISQPPCNIFRP-LILSMHLSPVSILSPVLLIYLVIHSQNELVSMSWLFRSTICFGVSLFL 63

Query: 140 SVLHICLNIHVTQAYGI*RLNIY 72
           S   + +   +  +Y    ++IY
Sbjct: 64  SFFLVRILWGIAYSYNSNSMSIY 86


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 276 EKHWLIESSVRFSKISKSKLEYLKTRDLKR*QNKNVQK 389
           ++H+ +++ V+ SK  KSKL  +  + LK+ +   +Q+
Sbjct: 84  DRHFALQTDVKLSKKRKSKLVEMTPKGLKKRKRVQIQE 121


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 144 KQTDVYEDVRGTTKDGCKEMSLFVKQIIHNAERISIYRSKISLQEKHWLIESSVR-FSKI 320
           K+ D+ E  R  TK+  + +   ++ IIH    I +  +++    K  L+  +V+ F ++
Sbjct: 97  KRIDIAEARREKTKEEEERIDELMRDIIHTDHSIEVIITEMEALAKRKLVNDAVKHFIEL 156

Query: 321 SKSK 332
           ++ K
Sbjct: 157 NRLK 160


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 514 PMETMESRQFFDSQFRKFRRH 452
           P+ET+ SRQF  S+ R+ R++
Sbjct: 154 PVETLRSRQFEASKLREIRKN 174


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 230 VYNLLNKQTHFFAAVFCC-SSDIFVYISLFVSVLHICLN 117
           ++ +L  + H      C    DIF++  +++S  HIC N
Sbjct: 202 IFKVLPPEDHLIDDYGCALQRDIFLHGRMYLSESHICFN 240


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 203 HFFAAVFCCSSDIFVYISLF 144
           +FF   F CS  +F YISLF
Sbjct: 84  YFFFYSFLCSPYLFKYISLF 103


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 356 ISRFQVFQLRFGDLR-KPDRALYKPMLLLQRYLRP 255
           +SRF +  +   D+  K DRAL + +L + RYL P
Sbjct: 487 LSRFDLLFIVTDDIDDKKDRALSEHVLRMHRYLPP 521


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 203 HFFAAVFCCSSDIFVYISLFVSVLHI 126
           H F  +FC ++ IF Y    V V HI
Sbjct: 283 HHFLTIFCLNAFIFAYSVGVVIVSHI 308


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 180 TKDGCKEMSLFVKQIIHNAERISIYRSKISLQEKHWLIESSV 305
           ++DGCK++S  ++  +    +I++   +IS   K +  E +V
Sbjct: 342 SQDGCKKVSKHIEDAVSKGAKITVGGKEIS-SSKGYFFEPTV 382


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 223 ICLTNKLISLQPSFVVPLTSSYTSVCLYQYYIFV*TYT*H 104
           +CL + LI L    +VPL + ++++ LY       T+  H
Sbjct: 99  MCLISLLIDLSIWNIVPLNARWSALLLYSSSFMATTFQTH 138


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 417 LQTFSKMITSFVHSCFVTVLNLSFSGIPASIWRSSKTGQSSL*ANASLAKISST 256
           + T+S  +++  HS        S S IP S+  S+    SS  +N  L+ I+S+
Sbjct: 706 VSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASS--SNTLLSSITSS 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,220
Number of Sequences: 5004
Number of extensions: 47560
Number of successful extensions: 154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)