Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0194
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical ...    28   3.9  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    27   6.8  

>AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical
           protein T27B7.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 310 FRRSPNRSWNT*KREI*NGNKTRMYKRRYHFRECL 414
           FRRS    W   K +   GNK R + R    R CL
Sbjct: 68  FRRSSKSKWINKKCQSKTGNKARCFCRPCRLRRCL 102


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 245 YTFCIVYNLLNKQTHFFAAVFCCSSDIFVYISLFVSVLHICLNIHVTQAYGI 90
           Y   IVY L+   T F    +   SD  V IS  +  L+  LNI +TQ + +
Sbjct: 68  YKMVIVYYLIFISTCFGVFFYPYLSDSIVLISFIIQGLYSSLNI-ITQVFHV 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,425
Number of Sequences: 27780
Number of extensions: 260845
Number of successful extensions: 828
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)