Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0194
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 283 CFSCKDIFDR*ILIRSALCIIC 218
           CF CKDI     L R  L + C
Sbjct: 25  CFVCKDITSTSALYRLKLYLFC 46


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 240 RISIYRSKISLQEKHWLIESSVRFSKISKSKLEY 341
           R S  R  IS   KH+ I+SSV  SK+  S   Y
Sbjct: 251 RSSTSRIVISESLKHFTIQSSVTTSKMMVSPRLY 284


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 205 LISLQPSFVVPLTSSYTSVCLYQ 137
           +I   P FVV L S + S C++Q
Sbjct: 345 IICWLPFFVVNLWSGFCSQCIWQ 367


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 517 KPMETMESRQFFDSQFRKFRRHYVHSVVRFIAFLTNI 407
           K  +T  +R+      R+F   Y H+V ++I  L  I
Sbjct: 428 KDFKTTRTREQVTEALRRFVEGYPHAVPKYIQRLKAI 464


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 517 KPMETMESRQFFDSQFRKFRRHYVHSVVRFIAFLTNI 407
           K  +T  +R+      R+F   Y H+V ++I  L  I
Sbjct: 343 KDFKTTRTREQVTEALRRFVEGYPHAVPKYIQRLKAI 379


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 517 KPMETMESRQFFDSQFRKFRRHYVHSVVRFIAFLTNI 407
           K  +T  +R+      R+F   Y H+V ++I  L  I
Sbjct: 662 KDFKTTRTREQVTEALRRFVEGYPHAVPKYIQRLKAI 698


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 287  PMLLLQRYLRPINTYTFCIVYNLLNKQTHF 198
            P+L      RPIN + + +V N +  Q  F
Sbjct: 1528 PILYFTIQYRPINEFHWTLVSNSVKMQRRF 1557


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 287  PMLLLQRYLRPINTYTFCIVYNLLNKQTHF 198
            P+L      RPIN + + +V N +  Q  F
Sbjct: 1524 PILYFTIQYRPINEFHWTLVSNSVKMQRRF 1553


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 496 IPWSPLVLEKQRPKYFDE 549
           I W+PL+  KQ  K F++
Sbjct: 431 ISWNPLMQPKQPIKLFEQ 448


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 395 IILENVCKKGYK 430
           I+L+N+ K GYK
Sbjct: 206 IVLDNIKKSGYK 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,868
Number of Sequences: 438
Number of extensions: 3490
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)