Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0194
         (551 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18260.1 68414.m02277 suppressor of lin-12-like protein-relat...    31   0.51 
At1g33050.2 68414.m04070 expressed protein                             27   6.3  
At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family pr...    27   8.3  

>At1g18260.1 68414.m02277 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 678

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 305 PVFEDLQIEAGIPENERFKTVTKQECTKDVIILENVCKKG-YKTYYRMDVVSPKFAELAI 481
           PV E  +I +G  EN+     ++ E  +D  ILE   +KG     Y++ +    F    +
Sbjct: 201 PVVEPTRIHSGTEENKGALRKSRGEEDEDFQILEYQAQKGNANAMYKIGL----FYYFGL 256

Query: 482 KELARFH--GLHWFWKS 526
           + L R H   LHWF K+
Sbjct: 257 RGLRRDHTKALHWFLKA 273


>At1g33050.2 68414.m04070 expressed protein
          Length = 607

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 349 VFRYSSFDLEIFENRTELSISQCF 278
           V +Y+S+DL++  N++++  S CF
Sbjct: 577 VAQYNSYDLKLLPNKSKVCCSNCF 600


>At1g10610.1 68414.m01202 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 421

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 275 LQRYLRPI---NTYTFCIVYNLLNKQTHFFAAVFCCSSDIFV 159
           ++ +LRP     T+  C+++ L +  + F   V CC S  ++
Sbjct: 10  VKEFLRPFVDSRTWDLCVIWKLGDDPSRFIEWVGCCCSGCYI 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,614,650
Number of Sequences: 28952
Number of extensions: 229703
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)