Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0193
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.27 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.4  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   4.4  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +1

Query: 202 TNRNGSKDYGL-FQINDRYGAAKVPVQAKTATLSAPTSXTDDITK 333
           T +   + YG+   I D YG  K+PV  K    S PT   D   K
Sbjct: 238 TQKTQGQIYGIKVDIRDAYGNVKIPVLCKLIQ-SIPTHLLDSEKK 281


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 255  WCSKGASPGK 284
            W  KGA PGK
Sbjct: 2549 WIEKGADPGK 2558


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 119 FLSSCTRPHLVNVLASEPTQ 60
           +LS+  R HL +++   PTQ
Sbjct: 64  YLSAPEREHLASIIRLTPTQ 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,496
Number of Sequences: 336
Number of extensions: 1546
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)