Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0193
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    31   0.65 
SB_18563| Best HMM Match : K_tetra (HMM E-Value=4.34403e-44)           30   1.1  
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   2.6  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                27   6.0  
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)                   27   7.9  
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)                 27   7.9  
SB_59062| Best HMM Match : Brevenin (HMM E-Value=0.39)                 27   7.9  

>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 117 EAWLRRKSHEELGMSGRAREQP*HVQDEHEP 209
           EAWL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_18563| Best HMM Match : K_tetra (HMM E-Value=4.34403e-44)
          Length = 191

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 216 LEGLRIVPDQRPVWCSKGASPGKDCNVKCSDLLX*RH 326
           L  LR+VPD R  W  + AS   D + + +++   RH
Sbjct: 43  LSTLRVVPDSRLAWIGENASKQADYDPETNEIFFDRH 79


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 124 GFEENLMRNWXCLXEHESSRDTSKTN 201
           GFEE + R W    + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -3

Query: 167 SXRHXQFLMRFSSKPCFL--SSCTRPHLVNVLASEPTQRTTKAKIINFCIS 21
           S  H   +      PC     SC +  + +V A E  Q TT AK ++ C S
Sbjct: 107 SGEHQSLISEDEKLPCLSVKKSCFKEGIASVPAKETDQVTTTAKDVSDCCS 157


>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
          Length = 717

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 94  CGLVHELRKHGFEENLMRNWXCLXEHESSRDTSKTNT 204
           CG  H L  H  EE  +R + CL   + S   S +N+
Sbjct: 596 CGYGHALTDHVLEEMAVRKYACLEIMDVSYSNSISNS 632


>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
          Length = 215

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 117 EAWLRRKSHEELGMSGRAREQP*HVQDEHEP*RLEGLR 230
           E W+RRK  E L    RAR +     +E    R E LR
Sbjct: 162 EEWMRRKDQEALEREERARREAEQKYEEKRKRREEVLR 199


>SB_59062| Best HMM Match : Brevenin (HMM E-Value=0.39)
          Length = 214

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 134 SSKPCFLSSCTRPHLVNVLASEPTQRTTKAKIINFCISIVS 12
           SS PC+     RP L  ++  +  Q T  A +I  CI +++
Sbjct: 43  SSTPCWHILKDRPRLCEIIHGQKAQYTIIALVIIDCIIVIA 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,787
Number of Sequences: 59808
Number of extensions: 195507
Number of successful extensions: 455
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)