Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0193
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             30   0.70 
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    28   3.7  
At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SD...    27   6.5  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 87  HEMRSRA*AEEAWLRRKSHEELGMSGRAR 173
           H     A  EEAWLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 95  HLVNVLASEPTQRTTKAKIINFCISIVSFE 6
           HLVNV   E + R ++  I   C S VSFE
Sbjct: 32  HLVNVHIFEESPRDSRDAICKLCKSTVSFE 61


>At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SDR)
           family protein similar to short-chain type
           dehydrogenase/reductase SP:Q08632 [Picea abies]
          Length = 270

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 153 PVPHEIFFEAMLPQLMHETASRERFGFRTNAED 55
           P+  E+FF+   P+L+ + A+   FG    A+D
Sbjct: 210 PIATEMFFDGKTPELVEKIAAESPFGRVGEAKD 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,870,313
Number of Sequences: 28952
Number of extensions: 130779
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)