Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0191
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    67   4e-12
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    66   8e-12
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    33   0.054
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    32   0.12 
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    31   0.16 
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      28   1.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   4.7  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    26   6.1  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   6.1  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    26   8.1  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   8.1  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 27/73 (36%), Positives = 48/73 (65%)
 Frame = +2

Query: 263 RSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKN 442
           R P+ +I  +++ + K  ++++ A+TK N N  +V EFL  +I  +  YFGK++E  +K+
Sbjct: 43  RHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKD 102

Query: 443 NFVLIYELLDEIL 481
           N   I+ELLDE++
Sbjct: 103 NVSFIFELLDEMI 115



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +3

Query: 135 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 245
           MI GLF++N KG+ LI + +R D+ ++  + FRV ++
Sbjct: 1   MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL 37


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 34/101 (33%), Positives = 58/101 (57%)
 Frame = +2

Query: 227 IQSECDPCSQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQS 406
           ++SE +   Q   +P       ++ +I   +++L A++K N +A  +  FL K+ DV   
Sbjct: 35  LKSEVEE-EQGFSTPCLTHEGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFID 93

Query: 407 YFGKISEENIKNNFVLIYELLDEILGLWLPSEF*TGVLXTF 529
           YF ++ EE+I++NFVL+YELLDEI+    P    T +L  +
Sbjct: 94  YFKELQEESIRDNFVLVYELLDEIMDFGFPQTTETKILQEY 134



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 135 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 230
           M   +FV N KG+V+ISR YR DI  + V+ F
Sbjct: 1   MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 488 KVPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 339
           +V RS  AT +S++S S   +  S   T  S+   ++ TQ+ WP +H  L
Sbjct: 724 RVTRSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +2

Query: 314 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
           A ++         N   + E +   ++++ S+FG + E ++  NF  +  +LDEI+
Sbjct: 64  AGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 12/55 (21%), Positives = 31/55 (56%)
 Frame = +2

Query: 317 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
           ++ L   T  +     + + + +I+DV++++FG  +   ++ N  +I +LL E++
Sbjct: 66  DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMI 120


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/46 (26%), Positives = 29/46 (63%)
 Frame = +2

Query: 302 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 439
           +I+  N  + +  +++ + A++ E   +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 77  SLNSNYIETNFERV*GLTYNDRRLVRLQP 163
           S + N +E+N E+V GL  ND  ++ L+P
Sbjct: 77  SSSLNTMESNIEKVNGLFPNDNSVIALKP 105


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +1

Query: 511 WGPXDISSLSRGIKSASKEXQAQIXLTS---NWSDWAGRRERHLSTRRNGAVPLMYLEYV 681
           +G   +  L   + S  +    +  + S   +WSD  G+ E     + +   PL + E  
Sbjct: 515 FGAVQMDDLEFALSSVRQSAMREFMMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETF 574

Query: 682 XLVGCQPPXAKLL 720
             +G +PP   LL
Sbjct: 575 SRLGVRPPKGVLL 587


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 340 CDCCQPNICTLDMEERCACNVGNR 269
           C C    +C L +E  C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 258 RCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 359
           RC  +  +L  H+S + SV +  W   Q++  TR
Sbjct: 51  RCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 51  YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 224
           +V ++ G  R I + L P+L      PT+      +NH G++ + R  +   G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,482,369
Number of Sequences: 5004
Number of extensions: 69777
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)