Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0191
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 77 1e-14
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 72 7e-13
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 71 2e-12
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 70 2e-12
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 52 8e-07
03_06_0198 - 32299480-32299643,32300084-32300126,32300843-323009... 35 0.099
05_05_0361 - 24406424-24406666,24407505-24407567,24407792-244079... 32 0.53
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 29 4.9
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 28 8.6
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 77.4 bits (182), Expect = 1e-14
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNN 445
PV I SF +++ +N+++ V N N A F+F+++ + + +SYF G E+ I+NN
Sbjct: 49 PVRQIGGCSFLYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 446 FVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGA----SSLPPRRXKPRFXSXVTGQIG 610
FVLIYELLDEI+ P +L + G SS P + P VTG +G
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVG 167
Score = 48.0 bits (109), Expect = 1e-05
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +3
Query: 129 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR 254
P ++ N +G+VLI+R+YRDD+G N VDAFR++++ +
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTK 43
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 71.7 bits (168), Expect = 7e-13
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = +2
Query: 257 QVRSPVTNI-ARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 433
+V SPV + A S+ I+ N++L ++QN NAA + FL +++DV + YF ++ EE+
Sbjct: 48 EVLSPVVHDDAGVSYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 107
Query: 434 IKNNFVLIYELLDEILGLWLP 496
+++NFV++YELLDE++ P
Sbjct: 108 LRDNFVVVYELLDEMMDFGYP 128
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 70.5 bits (165), Expect = 2e-12
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 448
PV N+ ++ H+K A ++ T NV+ +++ E L +I V + Y G ++E++++ NF
Sbjct: 49 PVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNEDSLRKNF 108
Query: 449 VLIYELLDEILGLWLPSEF*TGVLXTFHHS----AGASSLPPRRXKPRFXSXVTGQIGLG 616
+L+YELLDE++ P T VL ++ + A LPP F G
Sbjct: 109 ILVYELLDEVIDFGYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQGTKRMPGTA 168
Query: 617 AVKGI 631
K +
Sbjct: 169 VTKSV 173
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Frame = +2
Query: 257 QVRSPVT-NIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 433
+ SPV + A ++ I+ N++L ++QN NAA + FL +++DV + YF ++ EE+
Sbjct: 47 EAHSPVVYDDAGVTYMFIQHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEELEEES 106
Query: 434 IKNNFVLIYELLDEILGLWLPSEF*TGVLXTF 529
+++NFV++YELLDE++ P +L F
Sbjct: 107 LRDNFVVVYELLDEMMDFGYPQYTEAKILSEF 138
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 51.6 bits (118), Expect = 8e-07
Identities = 21/50 (42%), Positives = 35/50 (70%)
Frame = +2
Query: 347 NVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILGLWLP 496
+VN F+FL ++ DV+ Y G ++E+ IK+NFVL+Y++LDE++ P
Sbjct: 91 SVNMICDFQFLSRVADVLTDYLGDLNEDIIKDNFVLVYQILDEMMDNGFP 140
>03_06_0198 -
32299480-32299643,32300084-32300126,32300843-32300929,
32301063-32301098,32301187-32301295,32301408-32301499,
32302029-32302115,32303887-32304222
Length = 317
Score = 34.7 bits (76), Expect = 0.099
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 314 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
A+++ N V E + ++V+ YFG + E ++ NF Y +LDEIL
Sbjct: 174 ASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEIL 229
>05_05_0361 -
24406424-24406666,24407505-24407567,24407792-24407902,
24407986-24408069,24408748-24408848,24408983-24409589
Length = 402
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = -2
Query: 504 NSEGNQSPKISSSNS*IRTKLFLMFSSEILPKYDCITSMIFNRNSNTM 361
NS G+ S +SSNS + + + +SE+LP+ + + IF N++TM
Sbjct: 146 NSNGSNSSGNNSSNSAVDKRFKTLPTSEMLPRNEVLGGYIFVCNNDTM 193
>09_06_0076 + 20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 111 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSRC 263
KEC P M +FV G + + Y + GRNA+ + A S C
Sbjct: 884 KECADKPWMPITVFVVEKTGGLRVFTKYGKEYGRNAIQVLFDGCMKAASGC 934
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = +2
Query: 314 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
A+++ + N + EF+ +++ M +FG + E +I + ++ +L+E++
Sbjct: 64 ASLFFLVGVDNDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMV 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,013,395
Number of Sequences: 37544
Number of extensions: 468667
Number of successful extensions: 908
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -