Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0191
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    151   1e-36
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         61   1e-09
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.025
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  151 bits (365), Expect = 1e-36
 Identities = 72/118 (61%), Positives = 88/118 (74%)
 Frame = +2

Query: 257 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 436
           Q+RSPVTNIARTSFFHI++ N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK++EE I
Sbjct: 42  QIRSPVTNIARTSFFHIRQGNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKVTEEGI 101

Query: 437 KNNFVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGASSLPPRRXKPRFXSXVTGQIG 610
           KNNFVLIYELLDEI     P +  T +L TF    G  +   R  + +  S VTGQIG
Sbjct: 102 KNNFVLIYELLDEIADYGYPQKTDTAILKTFITQQGVKT-QTREEQAQITSQVTGQIG 158



 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 37/42 (88%), Positives = 39/42 (92%)
 Frame = +3

Query: 135 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSR 260
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVIHAR +
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVIHARGQ 42


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 26/68 (38%), Positives = 44/68 (64%)
 Frame = +2

Query: 326 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILGLWLPSEF 505
           +   TK+N N A++F FL +++ V   YF ++ EE+I++NFV+IYEL+DE++    P   
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFVIIYELMDELVDFGYPQFT 71

Query: 506 *TGVLXTF 529
            T +L  +
Sbjct: 72  ETKILQEY 79



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 483 DFGYPQNSELGS*XHFITQQGHQVCLQGGTSPDL 584
           DFGYPQ +E      +ITQ+GH++ L     P L
Sbjct: 64  DFGYPQFTETKILQEYITQEGHKLELAPKPPPAL 97


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 386 IIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
           + ++ + Y G I+EE IK N  LIYELLDE+L
Sbjct: 18  VCNLCKDYCGIINEEAIKCNLPLIYELLDEVL 49


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 418 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 326
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763


>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -1

Query: 490 PKSQDLIKQLIDQNKVILDVLFRNLAKIRLHHINDLQQELKYHGRVHIL 344
           PK+ +  ++L D  K IL  LF+NLAK +L+ + D   E K     HI+
Sbjct: 125 PKTDEQRQRLNDAIKNIL--LFKNLAKEQLNEVLDAMFERKTQAGDHII 171


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 418 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 326
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311


>SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 547 IKSASKEXQAQIXLTSNWSDWAGRRERHLSTRRNGAVPLMYLEYVXLVGCQ---PPXAKL 717
           I++ + + Q+Q      W  W G     ++   NG  PL+ +  V L+  +   PP  ++
Sbjct: 173 IENETFDKQSQSLYHIKWIQWKGLNTPIITQNENGPCPLLAIINVLLLQRRVSIPPMQEI 232

Query: 718 LSASRXLGKXG 750
           +S+S+ +   G
Sbjct: 233 ISSSQLMEYLG 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,205,257
Number of Sequences: 59808
Number of extensions: 534429
Number of successful extensions: 1202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)