Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0191
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 154 9e-38
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 151 8e-37
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 148 5e-36
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 76 3e-14
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 76 3e-14
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 69 4e-12
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 52 5e-07
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 40 0.003
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 29 5.8
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 154 bits (373), Expect = 9e-38
Identities = 75/119 (63%), Positives = 88/119 (73%)
Frame = +2
Query: 254 QQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 433
QQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN
Sbjct: 41 QQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEEN 100
Query: 434 IKNNFVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGASSLPPRRXKPRFXSXVTGQIG 610
+KNNFVLIYELLDEIL P GVL TF G + + + + S VTGQIG
Sbjct: 101 VKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRT-ATKEEQSQITSQVTGQIG 158
Score = 83.4 bits (197), Expect = 2e-16
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 135 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSR 260
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHAR +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ 42
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 151 bits (365), Expect = 8e-37
Identities = 76/124 (61%), Positives = 90/124 (72%), Gaps = 5/124 (4%)
Frame = +2
Query: 254 QQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 433
QQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN
Sbjct: 41 QQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEEN 100
Query: 434 IKNNFVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGA----SSLP-PRRXKPRFXSXVT 598
+KNNFVLIYELLDEIL P GVL TF G + +P + + + S VT
Sbjct: 101 VKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVT 160
Query: 599 GQIG 610
GQIG
Sbjct: 161 GQIG 164
Score = 83.4 bits (197), Expect = 2e-16
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 135 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSR 260
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHAR +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ 42
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 148 bits (359), Expect = 5e-36
Identities = 75/124 (60%), Positives = 89/124 (71%), Gaps = 5/124 (4%)
Frame = +2
Query: 254 QQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEEN 433
QQVRSPVTN+ARTSFFH+KR N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++EEN
Sbjct: 41 QQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEEN 100
Query: 434 IKNNFVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGA----SSLP-PRRXKPRFXSXVT 598
+KNNFVLIYELLDEIL P GVL TF G + +P + + + S VT
Sbjct: 101 VKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVT 160
Query: 599 GQIG 610
GQIG
Sbjct: 161 GQIG 164
Score = 83.4 bits (197), Expect = 2e-16
Identities = 37/42 (88%), Positives = 40/42 (95%)
Frame = +3
Query: 135 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSR 260
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHAR +
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ 42
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 76.2 bits (179), Expect = 3e-14
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +2
Query: 266 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 445
+PV T+F IK NI+L + + NVN M+ FL K ++V YF + EE++++N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 446 FVLIYELLDEILGLWLP 496
FV+IYELLDE++ P
Sbjct: 107 FVVIYELLDEMMDFGFP 123
Score = 33.5 bits (73), Expect = 0.20
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +3
Query: 147 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSRCDHLLPTL---HAHLSSISSVQ 317
+F+ + KG+ +ISR YR DI A+D F ++++ + P L + I
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 318 IFGWQQSQSKM*TRPWYLSSC*RSLM*CNRILARFLKRTSRITLF*SMSCLMRSWDFGYP 497
I+ +S + LS + + + + + R L DFG+P
Sbjct: 65 IYLVSACRSNV-NVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFP 123
Query: 498 QNSELGS*XHFITQQGHQV 554
Q +E +ITQ+G ++
Sbjct: 124 QTTESRILQEYITQEGQKL 142
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 76.2 bits (179), Expect = 3e-14
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +2
Query: 266 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 445
+PV T+F IK NI+L + + NVN M+ FL K ++V YF + EE++++N
Sbjct: 47 APVLTYQDTNFVFIKHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDN 106
Query: 446 FVLIYELLDEILGLWLP 496
FV+IYELLDE++ P
Sbjct: 107 FVVIYELLDEMMDFGFP 123
Score = 33.5 bits (73), Expect = 0.20
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +3
Query: 147 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSRCDHLLPTL---HAHLSSISSVQ 317
+F+ + KG+ +ISR YR DI A+D F ++++ + P L + I
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 318 IFGWQQSQSKM*TRPWYLSSC*RSLM*CNRILARFLKRTSRITLF*SMSCLMRSWDFGYP 497
I+ +S + LS + + + + + R L DFG+P
Sbjct: 65 IYLVSACRSNV-NVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFP 123
Query: 498 QNSELGS*XHFITQQGHQV 554
Q +E +ITQ+G ++
Sbjct: 124 QTTESRILQEYITQEGQKL 142
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 68.9 bits (161), Expect = 4e-12
Identities = 33/88 (37%), Positives = 51/88 (57%)
Frame = +2
Query: 266 SPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNN 445
SPV S+ +IK N++L ++K+N N +V L KI++V YF + EE +++N
Sbjct: 47 SPVLVHQGISYTYIKYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDN 106
Query: 446 FVLIYELLDEILGLWLPSEF*TGVLXTF 529
FV+IYEL DE+L P + +L F
Sbjct: 107 FVIIYELFDEMLDFGYPQTTESKILQEF 134
Score = 39.1 bits (87), Expect = 0.004
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Frame = +3
Query: 138 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARSRCDHLLPTLHAHLSSISSVQ 317
I GLF+ + KG V+ISR YR D+ + ++ F ++ +H +S
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKY 62
Query: 318 IFGWQQSQSKM*TRPWYLSSC*RSLM*CNRILARFLKRTSRITLF*SMSCLMRSW----D 485
+ + + SK T + S ++ + + K + + + + D
Sbjct: 63 MNVYLVTISKKNTNVILVLSALYKIV---EVFCEYFKTLEEEAVRDNFVIIYELFDEMLD 119
Query: 486 FGYPQNSELGS*XHFITQQGHQV 554
FGYPQ +E FITQQG+++
Sbjct: 120 FGYPQTTESKILQEFITQQGNRL 142
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 448
P+ + ++ + N++L AV MV EFL ++I YF + S+ ++K N
Sbjct: 47 PIISTPHHYLINVYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENC 106
Query: 449 VLIYELLDEILGLWLP 496
V+++ELLDE+L P
Sbjct: 107 VMVFELLDEMLDNGFP 122
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 314 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFL 118
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 180 ISRVYRDDIGRNAVDAFRVNVIHARSRCDHLLPTL 284
+ R++RDDIG V++ N I R R L TL
Sbjct: 1761 VFRIHRDDIGMILVNSLNDNQIEVRERATDALSTL 1795
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 120 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARS--RC 263
+++P I +F ++ G S Y DDI + A+D FRV H S RC
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESHRFSVRRC 313
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,418,427
Number of Sequences: 27780
Number of extensions: 404457
Number of successful extensions: 1017
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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