Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0191
(880 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 75 5e-14
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 75 5e-14
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 71 1e-12
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 71 1e-12
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 70 2e-12
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 70 2e-12
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 56 2e-08
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 36 0.047
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 33 0.19
At5g40480.1 68418.m04909 expressed protein ; expression supporte... 31 1.3
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 31 1.3
At5g23700.1 68418.m02778 hypothetical protein 30 1.8
At3g56890.1 68416.m06328 F-box family protein-related predicted ... 30 2.3
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ... 29 5.4
At4g20060.1 68417.m02935 expressed protein ; expression support... 28 9.5
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 75.4 bits (177), Expect = 5e-14
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGK-ISEENIKNN 445
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 446 FVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGA----SSLPPRRXKPRFXSXVTGQIG 610
FVLIYELLDEI+ P +L + G SS P + P VTG +G
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVG 167
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +3
Query: 129 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR 254
P ++ N +G+VLI+R YRDD+G N VDAFR +++ +
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTK 43
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 75.4 bits (177), Expect = 5e-14
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGK-ISEENIKNN 445
PV I SF +++ +N+++ V N N A F+F+++ + + +SYFG E+ I+NN
Sbjct: 49 PVRQIGGCSFVYMRISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNN 108
Query: 446 FVLIYELLDEILGLWLPSEF*TGVLXTFHHSAGA----SSLPPRRXKPRFXSXVTGQIG 610
FVLIYELLDEI+ P +L + G SS P + P VTG +G
Sbjct: 109 FVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVG 167
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +3
Query: 129 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR 254
P ++ N +G+VLI+R YRDD+G N VDAFR +++ +
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTK 43
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/87 (34%), Positives = 54/87 (62%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 448
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 449 VLIYELLDEILGLWLPSEF*TGVLXTF 529
VL+YELLDE++ T VL ++
Sbjct: 110 VLVYELLDEVIDFGYVQTTSTEVLKSY 136
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 70.9 bits (166), Expect = 1e-12
Identities = 30/87 (34%), Positives = 54/87 (62%)
Frame = +2
Query: 269 PVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNF 448
P+ N+ ++FH+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NF
Sbjct: 50 PIFNVDGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNF 109
Query: 449 VLIYELLDEILGLWLPSEF*TGVLXTF 529
VL+YELLDE++ T VL ++
Sbjct: 110 VLVYELLDEVIDFGYVQTTSTEVLKSY 136
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/91 (32%), Positives = 55/91 (60%)
Frame = +2
Query: 257 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 436
Q PV ++ ++ +N++L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 437 KNNFVLIYELLDEILGLWLPSEF*TGVLXTF 529
++NFV++YELLDE++ P +L F
Sbjct: 107 RDNFVVVYELLDEMMDFGYPQYTEARILSEF 137
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/80 (36%), Positives = 52/80 (65%)
Frame = +2
Query: 257 QVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI 436
Q PV ++ ++ +NI+L ++QN NAA + FL +++DV + YF ++ EE++
Sbjct: 47 QSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESL 106
Query: 437 KNNFVLIYELLDEILGLWLP 496
++NFV++YELLDE++ P
Sbjct: 107 RDNFVVVYELLDEMMDFGYP 126
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +2
Query: 299 FHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEI 478
F I R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE+
Sbjct: 58 FQIVRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEM 117
Query: 479 LGLWLP 496
+ P
Sbjct: 118 IDNGFP 123
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 314 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELL 118
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 314 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 481
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELL 118
>At5g40480.1 68418.m04909 expressed protein ; expression supported by
MPSS
Length = 1919
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 162 HKGEVLISRVYRDDIGRNAVDAFRVNVIHARSRCDHLLPTLHA 290
+KG + IS + RDD G ++VNV+ + D ++ TL A
Sbjct: 1757 NKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQFTDRIIITLPA 1799
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 287 VQCW*QVIAPAASMD--HIHSECVHSITTNIISVDSRDQHLAFMVVNEQ 147
V+C + AP S + H+H+ C H + T ++ + + HL M E+
Sbjct: 64 VRCKLESSAPVKSQELMHLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 235 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 107
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At3g56890.1 68416.m06328 F-box family protein-related predicted
proteins - Arabidopsis thaliana; contains TIGRFAM
TIGR01640: F-box protein interaction domain
Length = 219
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 162 HKGEVLISRVYRDDIGRNAVDAFRVNVIHARSRC 263
H+GEV Y +D+ N F+ ++ H +SRC
Sbjct: 171 HRGEVYAFVDYVEDLSLNDAKQFKSSISHIKSRC 204
>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
protein, putative (SR1) identical to partial sequence of
ethylene-induced calmodulin-binding protein GI:11545505
from [Arabidopsis thaliana]; contains Pfam profiles
PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
motif, and PF00023: Ankyrin repeat
Length = 1032
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 401 QSYFGKISEENIKNNFVLIYELLDEILGLWL 493
Q +IS+EN+KNN L+ E L E L WL
Sbjct: 616 QMLMNEISQENMKNN--LLQEFLKESLHSWL 644
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 481 QDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNICT 311
+DL+++L +D N L++L + H+ Q L+ G+V +LL C CT
Sbjct: 845 EDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSCT 904
Query: 310 LDMEER 293
++ +
Sbjct: 905 YGLQNQ 910
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,316
Number of Sequences: 28952
Number of extensions: 370612
Number of successful extensions: 785
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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