Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0190
         (837 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    26   0.32 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    26   0.32 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    26   0.32 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
 Frame = +2

Query: 5   IRHETQ*CLSKQNMASNGKLALLSVSDKTGLLS---LAKSLSE--C-GLQLIASGGTATG 166
           ++H+ Q  L KQ    + K ++ S   K G LS   L   +S+  C G ++ ++G    G
Sbjct: 57  MKHKRQ-TLGKQGDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAG--LCG 113

Query: 167 ASERXPDSSRCVGHHESTGDARGSGENFTS 256
           + +  PD S   G++ +T  A  +  NF +
Sbjct: 114 SHDEIPDISSTRGNNNNTPSATNNNTNFNN 143


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
 Frame = +2

Query: 5   IRHETQ*CLSKQNMASNGKLALLSVSDKTGLLS---LAKSLSE--C-GLQLIASGGTATG 166
           ++H+ Q  L KQ    + K ++ S   K G LS   L   +S+  C G ++ ++G    G
Sbjct: 5   MKHKRQ-TLGKQGDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAG--LCG 61

Query: 167 ASERXPDSSRCVGHHESTGDARGSGENFTS 256
           + +  PD S   G++ +T  A  +  NF +
Sbjct: 62  SHDEIPDISSTRGNNNNTPSATNNNTNFNN 91


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
 Frame = +2

Query: 5   IRHETQ*CLSKQNMASNGKLALLSVSDKTGLLS---LAKSLSE--C-GLQLIASGGTATG 166
           ++H+ Q  L KQ    + K ++ S   K G LS   L   +S+  C G ++ ++G    G
Sbjct: 188 MKHKRQ-TLGKQGDDGDDKDSITSDGGKNGKLSDKFLDDEMSKKSCQGCEMPSAG--LCG 244

Query: 167 ASERXPDSSRCVGHHESTGDARGSGENFTS 256
           + +  PD S   G++ +T  A  +  NF +
Sbjct: 245 SHDEIPDISSTRGNNNNTPSATNNNTNFNN 274


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 426 PMSMFSTASATVTSXLDTVWTN 361
           P++  S ASA   S LD  W +
Sbjct: 359 PLTSLSLASAQTLSELDLSWNS 380


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,111
Number of Sequences: 336
Number of extensions: 3278
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)