Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0190
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   120   2e-28
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    29   0.82 
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    28   1.4  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   4.4  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  120 bits (290), Expect = 2e-28
 Identities = 81/198 (40%), Positives = 110/198 (55%), Gaps = 1/198 (0%)
 Frame = +2

Query: 65  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERXPDSSRCVGHHESTGDARGSGE 244
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA    E   + +       +     G  +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 245 NFTSAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKXDVTVADAVENIDI 424
               AVH GILAR   SD++D+  Q  E I +VVCNLYPF +T++K +VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 425 GGVTLLRAXPRTTTGSPSSVTRPTTML*QRNQREQTSSDVFRAQGRD-LALKAFTHTSGL 601
           GGVTLLRA  +    + + VT  +         ++  SD      R+  ALKAF  T+  
Sbjct: 123 GGVTLLRAAAK----NHARVTILSDPADYATFTDKFLSDKLTQDDRNTYALKAFASTASY 178

Query: 602 *LAHIRTTSGKQYSXGAN 655
             A I     KQY+ G +
Sbjct: 179 DAA-ITDYFRKQYAAGVD 195


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 22  VVLEQTEHGVKWKTSSSQRFGQNGS 96
           V ++  +HG++W T   Q FG+  S
Sbjct: 641 VAIDYRDHGIRWVTLGEQNFGEGSS 665


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 212 ESTGDARGSGENFTSAVHAGILARLSDSDQEDMKR 316
           + TG A  SGENFT+A    IL   +D   E  ++
Sbjct: 677 QETGYAINSGENFTTAARHAILDLTNDEGIEQSRK 711


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 435 VTPPMSMFSTASATVTSXLDTVWTNGYRLQTT 340
           V PP+S F +AS  V     T   NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALWNGYRYHLT 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,007
Number of Sequences: 5004
Number of extensions: 53855
Number of successful extensions: 142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)