Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0190
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 75 7e-14
11_06_0347 + 22555087-22555943,22556638-22558783 30 2.0
11_06_0337 - 22454281-22456399,22458520-22459388 30 2.0
11_06_0349 + 22565405-22566279,22567774-22569772,22570360-225704... 30 2.6
11_02_0149 - 8801675-8804332 29 4.6
02_01_0100 + 743467-744868,745066-745127 29 4.6
11_06_0257 + 21746643-21748091 29 6.1
02_01_0098 + 717857-719252,719453-719511 29 6.1
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 28 8.0
08_01_0621 - 5426210-5427787 28 8.0
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 74.9 bits (176), Expect = 7e-14
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = +2
Query: 59 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERXPDSSRCVGHHESTGDARGS 238
K AL+S+SDKT L L L G +I++GGTA+ + ++ G
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 239 GENFTSAVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSKXDVTVADAVEN 415
+ +VH GILAR + + VVV NLYPF V+ ++ D +EN
Sbjct: 106 VKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGIEN 165
Query: 416 IDIGGVTLLRA 448
IDIGG T++RA
Sbjct: 166 IDIGGPTMIRA 176
>11_06_0347 + 22555087-22555943,22556638-22558783
Length = 1000
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +2
Query: 59 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERXPDSSRCVGHHESTGDARGS 238
+L D LLS + LS C L+ +A + TG +R SS+ H T + GS
Sbjct: 766 RLVNFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLDRSLSSSQAQPEHLYTLELSGS 825
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 29 LSKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERXPDSSRCVGH 208
L+ N + ++ SV D LLS + LS C L+ + TG R SS+
Sbjct: 751 LTNLNKLAIYRIVKFSVKDDELLLSAIEHLSSCSLKFLVVDDNFTGFLYRSLSSSQAPPE 810
Query: 209 HESTGDARGS 238
H T + GS
Sbjct: 811 HLYTLELSGS 820
>11_06_0349 +
22565405-22566279,22567774-22569772,22570360-22570478,
22570835-22571117
Length = 1091
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 59 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERXPDSSRCVGHHESTGDARG 235
KL D LLS + LS C L+ +A + TG E SS+ H T + G
Sbjct: 773 KLVKFQAKDDELLLSAIEHLSSCSLKFLAIDDSFTGFLESSLSSSQAAPEHLYTLELSG 831
>11_02_0149 - 8801675-8804332
Length = 885
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 32 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 139
S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>02_01_0100 + 743467-744868,745066-745127
Length = 487
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Frame = -2
Query: 224 LRCSRDVRHILNCQAXVPKRPWRYR---------HWRSTAGHIPTDSLLTRVDPFCPKR* 72
+RCS R+++ C +RP ++ W+STA I RV P P
Sbjct: 168 VRCSGGARYVIACLMPTIRRPMEFKVMRFDSDVGRWKSTAVSISEPVERDRVLPI-PDTA 226
Query: 71 EELVFHLT 48
++VFH T
Sbjct: 227 SQMVFHCT 234
>11_06_0257 + 21746643-21748091
Length = 482
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 227 HLRCSRDVRHILNCQAXVPKRPWRYRHWRST 135
HL C++ R+++N + WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>02_01_0098 + 717857-719252,719453-719511
Length = 484
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Frame = -2
Query: 224 LRCSRDVRHILNCQAXVPKRPWRYR---------HWRSTAGHIPTDSLLTRVDPFCPKR* 72
+RCS R+++ C +RP ++ W+STA I RV P P
Sbjct: 165 VRCSGGARYVIACLMPTIRRPMEFKVMRFDSDVGRWKSTAVSISEPVERDRVLPI-PDTA 223
Query: 71 EELVFHLT 48
++VFH T
Sbjct: 224 SQVVFHCT 231
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 248 SFHPTPEHLRCSR-DVRHILNCQAXVPKRPWRYRHWRST 135
S HP H S+ D I +C+A V WR RH +T
Sbjct: 791 SHHPFSAHAHYSQPDFPTIASCRAAVASSKWRRRHPSTT 829
>08_01_0621 - 5426210-5427787
Length = 525
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 561 LPCALKTSDDVCSL*FLCYSIVVGRVTDDGDPVVVLGXARRRVTPP 424
LPC S D + YS+ GR+ DDGD + + RR V+ P
Sbjct: 126 LPCLALPSLDG----YRVYSLAEGRMCDDGDVRLPMACRRRYVSSP 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,216,713
Number of Sequences: 37544
Number of extensions: 415146
Number of successful extensions: 1146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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