Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0190
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             136   2e-32
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      84   2e-16
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         32   0.50 
SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)                 31   0.88 
SB_26612| Best HMM Match : NC (HMM E-Value=6.7)                        29   4.7  
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)                  28   8.2  
SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)               28   8.2  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  136 bits (330), Expect = 2e-32
 Identities = 93/213 (43%), Positives = 118/213 (55%), Gaps = 10/213 (4%)
 Frame = +2

Query: 35  KQNMAS--NGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATG---ASERXPDSSRC 199
           K+ MA+   G LALLSVS+K GL+  AK L + G +L+ASGGTA     A     D S  
Sbjct: 24  KKKMAAVGAGSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEI 83

Query: 200 VGHHESTGDARGSGENFTSAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVS 379
            G  E  G   G  +    AVH GILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+
Sbjct: 84  TGAPEMLG---GRVKTLHPAVHGGILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVA 140

Query: 380 KXDVTVADAVENIDIGGVTLLRAXPR-----TTTGSPSSVTRPTTML*QRNQREQTSSDV 544
           K  V V++AVE IDIGGVTLLRA  +     T    P    +  +        E  + D 
Sbjct: 141 KEGVIVSEAVEQIDIGGVTLLRAAAKNHERVTVVCDPEDYNKVLS-----EMTENETCDT 195

Query: 545 FRAQGRDLALKAFTHTSGL*LAHIRTTSGKQYS 643
                + LALKAF+HT+   +A I     K+YS
Sbjct: 196 LPDTRKTLALKAFSHTASYDMA-ISDYFRKEYS 227


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 83.8 bits (198), Expect = 2e-16
 Identities = 40/59 (67%), Positives = 48/59 (81%)
 Frame = +2

Query: 272 ILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKXDVTVADAVENIDIGGVTLLRA 448
           ILAR+S+ D+ DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 2   ILARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60



 Score = 32.7 bits (71), Expect = 0.38
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 454 KNHDRVTVVCXPADYD 501
           KNH+RVTVVC P DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 149 GGTATGASERXPDSSRCVGHHESTGDARGSGENFTSAVHA 268
           GG+  G+     D+ RC G  +S  + R +G N TS  HA
Sbjct: 516 GGSIPGSGTIWMDNVRCNGTEKSLSECRHNGWNVTSCTHA 555


>SB_53319| Best HMM Match : zf-CW (HMM E-Value=7.7e-17)
          Length = 714

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = +2

Query: 395 VADAVENIDIGGVTLLRAXPRT--TTGSPSSVTR---PTTML*QRNQREQTSSDVFRA 553
           +A AV N+ +   T LR  P T  TTGSPS VTR   P  ++     +  TSS V RA
Sbjct: 246 IAPAVTNL-VTLSTALRVLPSTSATTGSPSFVTRQGVPVRIVTSSGSQVATSSGVVRA 302


>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
          Length = 451

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 504 SIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSXLDTVWTNGYRLQTTTL 334
           S+   RVT   D V        R+TP M    TAS T   +T  +DTV+T        TL
Sbjct: 76  SVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTL 135

Query: 333 II 328
           ++
Sbjct: 136 VM 137



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 504 SIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSXLDTVWTNGYRLQTTTL 334
           S+   R+T   D V        R+TP M    TAS T   +T  +DTV+T        TL
Sbjct: 144 SVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTL 203

Query: 333 II 328
           ++
Sbjct: 204 VM 205


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 290 DSDQEDMKRQKYEMISVVVCNLYPFVQTVSKXDVTVADAVENIDIGGVT 436
           +SD+ED + + YE+I          ++ +   D+     ++ I IGG T
Sbjct: 5   ESDKEDSQEEPYEIIETPGARQQDLLRDLMSMDLGNRTTIQQIGIGGAT 53


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 429  PPMSMFSTASATVTSXLDTVWTN-GYRLQTTTLIISYF*RFMSSWSESDNRAKIPACTAD 253
            PP+SM  T    ++   D +  N G+ +Q  TL+  +  +   + +     +K+     D
Sbjct: 1532 PPLSMICTLCGIISGFFDLIMANGGFNIQEQTLVSEH--QAAEAPASESGSSKVVTFVDD 1589

Query: 252  VKFSPDPRASPVLS*CPTHL 193
             +     R +  +   PTHL
Sbjct: 1590 AEQEMRERRTSYVQRNPTHL 1609


>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
          Length = 1231

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
 Frame = +2

Query: 215  STGDARGSGENFTSAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKXDVT 394
            S G   G G + TSA         SD D+++ + ++   + V+   +       S  D  
Sbjct: 834  SDGGTSGLGSSVTSAEDLDTQKEGSDEDEDEGEEEEEAAVPVLKEEILELEDQDSDSDDD 893

Query: 395  VADAVENIDIGGVTLLR-AXPRTTTGSPSSVTRPTTML*QRNQREQTSSDVFRAQ 556
              D  ++ D    TL R   PRT   S S  TR   M  +R + E+ + +  R +
Sbjct: 894  DDDDDDDDDCKKSTLERDMTPRTMRKSLSKSTR-ERMERKRREEEERAKEQMRIE 947


>SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)
          Length = 291

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 521 REQTSSDVFRAQGRDLALKAFTHTSGL*LAHIRTTSGKQYS 643
           +E ++ +V+R  G+ L     T  +G+ +A+ +T +GK Y+
Sbjct: 20  QEASNDEVYRVVGKPLVEACLTGMTGILMAYGQTGAGKTYT 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,714,457
Number of Sequences: 59808
Number of extensions: 469209
Number of successful extensions: 1234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)