Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0190
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    73   2e-13
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /...    28   8.8  
At1g64410.1 68414.m07301 hypothetical protein                          28   8.8  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    28   8.8  
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    28   8.8  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 3/189 (1%)
 Frame = +2

Query: 38  QNMASNG-KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERXPDSSRCVGHHE 214
           Q+  S+G K AL+S+SDK  L SL   L E G  ++++GGTA+         ++      
Sbjct: 64  QSSGSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTH 123

Query: 215 STGDARGSGENFTSAVHAGILARLS-DSDQEDMKRQKYEMISVVVCNLYPFVQTV-SKXD 388
                 G  +     +H GILAR   +   E +         VVV NLYPF + V +   
Sbjct: 124 FPEMLDGRVKTLHPNIHGGILARRDVEHHMEALNEHGIGTFDVVVVNLYPFYEKVTAPGG 183

Query: 389 VTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*QRNQREQTSSDVFRAQGRDL 568
           ++  D +ENIDIGG  ++RA  +        V            +   S   FR   R L
Sbjct: 184 ISFEDGIENIDIGGPAMIRAAAKNHKDVLIVVDSGDYQAVLEYLKGGQSDQQFR---RKL 240

Query: 569 ALKAFTHTS 595
           A KAF H +
Sbjct: 241 AWKAFQHVA 249



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +3

Query: 168 LRNAGLTVQDVSDITRAPEMLGGRVKTLH 254
           L NAG++V  V  +T  PEML GRVKTLH
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLH 136


>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 469

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 61  TSSSQRFGQNGSTLVSKESVGMWPAVDRQWRYRHGRFGTXA*QF 192
           TS    F Q G+T+++ +    WP +     Y  GR GT   +F
Sbjct: 97  TSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 454 KNHDRVTVVCXPADYDAVAKKSK 522
           K HDRVTV   P D D  AKK K
Sbjct: 582 KGHDRVTVTVEPNDQD-TAKKEK 603


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 454 KNHDRVTVVCXPADYDAVAKKSK 522
           K HDRVTV   P D D  AKK K
Sbjct: 208 KGHDRVTVTVEPNDQD-TAKKEK 229


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 439 EGHAADVDVLDRVRXGHVXLRYRLDERVQVTDHHA 335
           +G+A     +  +R G     +RL E +  TDHHA
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHA 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,602,917
Number of Sequences: 28952
Number of extensions: 306499
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)