Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0189
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 71 2e-13
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 40 3e-04
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 38 0.001
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 36 0.010
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|... 28 1.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 4.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 7.9
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 70.9 bits (166), Expect = 2e-13
Identities = 28/68 (41%), Positives = 35/68 (51%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 437
GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 438 CYNCNKSG 461
CY C + G
Sbjct: 85 CYKCGRVG 92
Score = 70.1 bits (164), Expect = 4e-13
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Frame = +3
Query: 255 TGHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGR 419
TGH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C G+
Sbjct: 44 TGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQ 103
Query: 420 ES--------ATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISRECDEA 548
+S + CY C G H + GK GH S EC +A
Sbjct: 104 QSGGRFGGHRSNMNCYACGSYG-HQARDCTMGVKCYSCGKIGHRSFECQQA 153
Score = 68.5 bits (160), Expect = 1e-12
Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG---- 461
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +G
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 462 --PHLPQLSRRHQDVLRVGKPGHISREC 539
P P R+ + + G+ GHI+R+C
Sbjct: 72 DCPSSPN-PRQGAECYKCGRVGHIARDC 98
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 404
GH ARDC +CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 125 GHQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 357 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQD--VLRVGKPGHIS 530
P CYNC + GH AR C +G CYNCN++G + + Q+ G GH+
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 531 RECDEARN 554
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 50.8 bits (116), Expect = 2e-07
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Frame = +3
Query: 258 GHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR 398
GH ARDC+ + CY C GH AR+C CY+C K GH +
Sbjct: 92 GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSF 148
Query: 399 NCPEGGRESATQTCYNCNKSG 461
C + S Q CY CN+ G
Sbjct: 149 ECQQA---SDGQLCYKCNQPG 166
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 112 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKC 249
S P + CYKC R GH AR+C G S G +R C+ C
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 121
Score = 36.3 bits (80), Expect = 0.006
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 15/55 (27%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNR 255
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGR 90
Score = 35.5 bits (78), Expect = 0.010
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQDT 264
CY C GH ARECT+G + + + +C + ++ T
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 124 AMSSSVCYKCNRTGHFARECT 186
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNR 255
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQ 164
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHL 470
C+ C GHI ++C ++ D S C+ C H C + G + C+ C+++G HL
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAK-CFICHENG-HL 135
Score = 39.1 bits (87), Expect = 8e-04
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +3
Query: 258 GHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKTGHIARNCPE 410
GH +DC E D C+RC H C+ + P + C+ C++ GH++ C +
Sbjct: 86 GHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Score = 34.3 bits (75), Expect = 0.023
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +3
Query: 330 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSR----RHQD 497
R Q + C+ C + GHI ++CPE + C+ C L S+ +
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 498 VLRVGKPGHISRECDE 545
+ GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 33.9 bits (74), Expect = 0.030
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 431
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 434
GH ++DC C C HI+ C P C NC GHIA C E R+ +
Sbjct: 96 GHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE-PRKRGPR 149
Query: 435 TCYNCN 452
C C+
Sbjct: 150 VCRTCH 155
Score = 36.7 bits (81), Expect = 0.004
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISRECD 542
C+NC GHI+++CP C C H+ + + G GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCS 141
Query: 543 EAR 551
E R
Sbjct: 142 EPR 144
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 35.5 bits (78), Expect = 0.010
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 407
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.9 bits (64), Expect = 0.49
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
C NC GH +CPE + C +C G
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIG 343
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 258 GHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 359
GH DC E + C C GHIAR+C +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Frame = +2
Query: 407 RGGAGVCDADLL*LQQVRATSPATVPTAPRRATCRQARPHLARVRRGAELAAATLSPLQS 586
+G +CD L ++ V PR C +R + + R+ L + +S
Sbjct: 27 KGDTDMCDKQQLKKKEKEKQRAQKVACGPRDPPCTFSRSYTDQKRKEIHLGSTEWGLKES 86
Query: 587 TYVYYDANARNDKAKG--RPRAXTRLTDLQLQXXERR 691
+ N R + KG RP +L L+L + R
Sbjct: 87 FTLTRGPNRRGNVGKGVKRPMVNKKLGQLELTSLDLR 123
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 136 SVCYKCNRTGHFAREC 183
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 261 HFARDCKEEADRCYRCNGTGHIAREC 338
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 136 SVCYKCNRTGHFAREC 183
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 261 HFARDCKEEADRCYRCNGTGHIAREC 338
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -3
Query: 447 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 283
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 282 P 280
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 330 RECAQSPDEPS-----CYNCNKTGHIARNCP 407
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 342 QSPDEPSCYNCNKTGHIARN--CPEGGR 419
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,468
Number of Sequences: 5004
Number of extensions: 54928
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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