Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0189
(863 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 58 1e-08
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 47 2e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 47 2e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 47 2e-05
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 46 3e-05
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 46 3e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 44 1e-04
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 44 1e-04
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 44 1e-04
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 41 0.001
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 37 0.021
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 37 0.021
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 37 0.021
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.037
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.037
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 36 0.037
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 36 0.049
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 36 0.049
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 36 0.049
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 36 0.049
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 36 0.049
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 34 0.15
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 34 0.15
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 32 0.61
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.61
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.80
AF026207-2|AAK71372.1| 233|Caenorhabditis elegans Hypothetical ... 31 1.1
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 31 1.4
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 30 1.9
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 2.4
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 3.2
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 29 5.7
U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in b... 29 5.7
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 29 5.7
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 29 5.7
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 28 7.5
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 28 7.5
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 9.9
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 57.6 bits (133), Expect = 1e-08
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCP 407
+CY C +GHI+REC +S +E CY C +TGHI+R+CP
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 55.6 bits (128), Expect = 4e-08
Identities = 45/143 (31%), Positives = 60/143 (41%), Gaps = 41/143 (28%)
Frame = +3
Query: 249 QPTGHFARDCKE-EAD----------RCYRCNGTGHIARECAQSPDEP----------SC 365
Q GH +R+C E+D CY C TGH +R+C + SC
Sbjct: 10 QQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSC 69
Query: 366 YNCNKTGHIARNCP----EG-----------GRESATQTCYNCNKSGPHLPQL-----SR 485
YNC GH +R+CP EG GR Q CYNC +SG H+ + S
Sbjct: 70 YNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSG-HISRECTESGSA 128
Query: 486 RHQDVLRVGKPGHISRECDEARN 554
+ + + GHISR+C N
Sbjct: 129 EEKRCYQCQETGHISRDCPSQTN 151
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 17/75 (22%)
Frame = +3
Query: 288 ADR-CYRCNGTGHIARECAQSPDE---------PSCYNCNKTGHIARNCPEGGRESATQ- 434
+DR CY+C GHI+R C + +CYNC +TGH +R+CP+GG +
Sbjct: 2 SDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRG 61
Query: 435 ------TCYNCNKSG 461
+CYNC G
Sbjct: 62 GGGGGGSCYNCGGRG 76
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDCKE----EADRCYRCNGTGHIAREC 338
GGRG G F + +GH +R+C E E RCY+C TGHI+R+C
Sbjct: 95 GGRGGEGRSFGGQ--KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
S CY C TGHF+R+C +GG G C+ C
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNC 72
Score = 36.3 bits (80), Expect = 0.028
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C R+GH +RECT+ G + + ++C++C
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQC 136
Score = 31.9 bits (69), Expect = 0.61
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQG 192
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Frame = +1
Query: 142 CYKCNRTGHFARECT-------QGGVVSR-DSGFNRQREKCFKCNR 255
CY C GH++R+C GG R G + +KC+ C R
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGR 114
Score = 29.1 bits (62), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 142 CYKCNRTGHFAREC 183
CY+C TGH +R+C
Sbjct: 133 CYQCQETGHISRDC 146
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRES 425
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE +
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 304
Query: 426 ATQTCYNCNKSG 461
+ + SG
Sbjct: 305 EGRNGFTGGSSG 316
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 410
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 44.4 bits (100), Expect = 1e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
+C+NC + GH + +CPE +E + CYNC + G
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPG 405
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 407
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Frame = +3
Query: 249 QPTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHI 392
Q GH + DC KE R CY C GH +R+C + P E S + G
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGF 436
Query: 393 ARNCPEG---GRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
EG E C+NC G + + G+ GH S EC
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
+C+NC + GH + +CPE +E + CYNC + PGH SR+C
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ--------------------PGHNSRDC 297
Query: 540 DEAR 551
E R
Sbjct: 298 PEER 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 359
GH + +C E C+ C GH + EC +P +P
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRES 425
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE +
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 304
Query: 426 ATQTCYNCNKSG 461
+ + SG
Sbjct: 305 EGRNGFTGGSSG 316
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 410
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 44.4 bits (100), Expect = 1e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
+C+NC + GH + +CPE +E + CYNC + G
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPG 405
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 407
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Frame = +3
Query: 249 QPTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHI 392
Q GH + DC KE R CY C GH +R+C + P E S + G
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGF 436
Query: 393 ARNCPEG---GRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
EG E C+NC G + + G+ GH S EC
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
+C+NC + GH + +CPE +E + CYNC + PGH SR+C
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ--------------------PGHNSRDC 297
Query: 540 DEAR 551
E R
Sbjct: 298 PEER 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 359
GH + +C E C+ C GH + EC +P +P
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPEGGRES 425
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE +
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPR 304
Query: 426 ATQTCYNCNKSG 461
+ + SG
Sbjct: 305 EGRNGFTGGSSG 316
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 410
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 44.4 bits (100), Expect = 1e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
+C+NC + GH + +CPE +E + CYNC + G
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPG 405
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 407
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 454 KCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Frame = +3
Query: 249 QPTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDE-----PSCYNCNKTGHI 392
Q GH + DC KE R CY C GH +R+C + P E S + G
Sbjct: 377 QQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGF 436
Query: 393 ARNCPEG---GRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
EG E C+NC G + + G+ GH S EC
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
+C+NC + GH + +CPE +E + CYNC + PGH SR+C
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ--------------------PGHNSRDC 297
Query: 540 DEAR 551
E R
Sbjct: 298 PEER 301
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 359
GH + +C E C+ C GH + EC +P +P
Sbjct: 462 GHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 494
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 46.4 bits (105), Expect = 3e-05
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Frame = +3
Query: 273 DCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRESATQTCYN 446
D E C+ C GHI++EC P P C NC + GH A +C + C N
Sbjct: 564 DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ--PRVPRGPCRN 620
Query: 447 CNKSG---PHLPQLSRRHQDVLRVGKPGHISREC--DEARN*PQPPC 572
C G Q G+ GH +++C + R P PC
Sbjct: 621 CGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = +3
Query: 258 GHFARDCKEEADR------CYRCNGTGHIARECAQSPDE 356
GHFA+DC+ E R C RC GH EC P +
Sbjct: 648 GHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 46.4 bits (105), Expect = 3e-05
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Frame = +3
Query: 273 DCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPEGGRESATQTCYN 446
D E C+ C GHI++EC P P C NC + GH A +C + C N
Sbjct: 564 DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ--PRVPRGPCRN 620
Query: 447 CNKSG---PHLPQLSRRHQDVLRVGKPGHISREC--DEARN*PQPPC 572
C G Q G+ GH +++C + R P PC
Sbjct: 621 CGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPC 667
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = +3
Query: 258 GHFARDCKEEADR------CYRCNGTGHIARECAQSPDE 356
GHFA+DC+ E R C RC GH EC P +
Sbjct: 648 GHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 407
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
+C+NC + GH + +CPE +E + CYNC + G
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPG 192
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 17/114 (14%)
Frame = +3
Query: 249 QPTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCP 407
Q GH + DC KE R CY C GH +REC + P E N
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGG 223
Query: 408 E----------GGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
GG E C+NC G + + G+ GH S EC
Sbjct: 224 NDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 410
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQ 189
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 359
GG G G + + + GH + +C E C+ C GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 407
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
+C+NC + GH + +CPE +E + CYNC + G
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPG 192
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 17/114 (14%)
Frame = +3
Query: 249 QPTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCP 407
Q GH + DC KE R CY C GH +REC + P E N
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGG 223
Query: 408 E----------GGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
GG E C+NC G + + G+ GH S EC
Sbjct: 224 NDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 410
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQ 189
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 359
GG G G + + + GH + +C E C+ C GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 407
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 44.0 bits (99), Expect = 1e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
+C+NC + GH + +CPE +E + CYNC + G
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPG 192
Score = 41.9 bits (94), Expect = 6e-04
Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 17/114 (14%)
Frame = +3
Query: 249 QPTGHFARDC----KEEADR-CYRCNGTGHIARECAQS--PDEPSCYNCNKTGHIARNCP 407
Q GH + DC KE R CY C GH +REC + P E N
Sbjct: 164 QQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGG 223
Query: 408 E----------GGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
GG E C+NC G + + G+ GH S EC
Sbjct: 224 NDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 410
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQ 189
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.80
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP 359
GG G G + + + GH + +C E C+ C GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC-PNPAKP 283
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 11/67 (16%)
Frame = +3
Query: 261 HFARDCKEEADR------CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCP 407
H +CK++ + C+ C GHI+R+C Q+ PD C C H+ R+CP
Sbjct: 264 HSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGANTHLRRDCP 323
Query: 408 EGGRESA 428
E + A
Sbjct: 324 ELAAQKA 330
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRR------HQDVLRVGKPG 521
+C++C + GH +CP+ S+ C+ C + + ++ + + G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 522 HISRECDEARN 554
HISR+C + N
Sbjct: 290 HISRDCHQNVN 300
Score = 35.1 bits (77), Expect = 0.065
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 270 RDCKEEADRCYRCNGTGHIARECAQ---SPDEPSCYNCNKTGHIARNCPEGG-RESATQT 437
+D K C+ C GH +C + S + C+ C H C + G + T
Sbjct: 222 QDQKITGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYAT 281
Query: 438 CYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
C+ C + G H+ + HQ+V V G C
Sbjct: 282 CFVCKQVG-HISR--DCHQNVNGVYPDGGCCNVC 312
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 288 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 410
+ +C C +G C + + +C+ CN+ GHIA NCP+
Sbjct: 653 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPK 692
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 243 QVQPTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 362
+ Q +G C + +R C+RCN GHIA C + + S
Sbjct: 658 ECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 698
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 288 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 410
+ +C C +G C + + +C+ CN+ GHIA NCP+
Sbjct: 556 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPK 595
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 243 QVQPTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 362
+ Q +G C + +R C+RCN GHIA C + + S
Sbjct: 561 ECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 601
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 288 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 410
+ +C C +G C + + +C+ CN+ GHIA NCP+
Sbjct: 567 SQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIAWNCPK 606
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 243 QVQPTGHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS 362
+ Q +G C + +R C+RCN GHIA C + + S
Sbjct: 572 ECQQSGWHMASCFKLKNRACFRCNEMGHIAWNCPKKNENTS 612
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 413
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 413
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHL 470
CY+C GH++++C QS N KT H N E G T N G +
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLNVEGQQI 369
Score = 32.3 bits (70), Expect = 0.46
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 357 PSCYNCNKTGHIARNCPEGGRES 425
P CY C GH++++CP+ S
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGF-NRQRE 234
CYKC GH +++C Q S +SG NR+ E
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTE 341
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 294 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 422
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 156
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 294 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 422
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 294 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 422
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 294 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 422
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 35.5 bits (78), Expect = 0.049
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEG 413
+CY C + GHI+RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 31.9 bits (69), Expect = 0.61
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQG 192
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 457 PGHISRNCPDG 489
PGHISRNCP+G
Sbjct: 12 PGHISRNCPNG 22
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +3
Query: 288 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 443
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 TQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISRECDE-ARN*PQPP 569
+ TC+NC K G + S ++ G P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECA 341
GH A +C C C H A ECA
Sbjct: 211 GHRATECSAPQRECANCGDPNHRANECA 238
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +3
Query: 288 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 443
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 429 TQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISRECDE-ARN*PQPP 569
+ TC+NC K G + S ++ G P H + EC ++N Q P
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECA 341
GH A +C C C H A ECA
Sbjct: 211 GHRATECSAPQRECANCGDPNHRANECA 238
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = -3
Query: 492 GAVGTVAGDVARTCCSYSRSASQTPAPPRDSSVRCG-PSCCSCNTTARPGSVRTRALCAP 316
G +G G ++ C QT P CG P C C V T C
Sbjct: 54 GGMGGCCGGMSGCGCGSMGMCGQTCCPSAPPPCSCGTPGCMQCVQQTVLVPVTTTTCCKC 113
Query: 315 CRYICSN 295
C+ +C+N
Sbjct: 114 CQPVCTN 120
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Frame = -3
Query: 456 TCCSYSRSASQTPAPPRDSSVRCGPS-----CCSCNTTARPGSVRTRALCAPCRYICSNG 292
+CC Y A P PP +S CGPS CC P +C
Sbjct: 79 SCCPYVPPAPLPPPPP-PASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQ 137
Query: 291 QPLPCNPSQSVLSVAL 244
P+P NP +++ A+
Sbjct: 138 APVPENPCCQIVAAAM 153
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.61
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQGGV 198
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDV--LRVGKPGHISR 533
+C+NC++ GH A CP ++ ++ +P + DV + G+ GH +
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPD-KKNLSDVTCYKCGEKGHYAN 263
Query: 534 EC 539
C
Sbjct: 264 RC 265
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARNCPEGGRE 422
GH A C + R N H + + PD+ + CY C + GH A C +G
Sbjct: 213 GHKATTCPHLPGQT-RQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANRCHKGALA 271
Query: 423 SATQTCY 443
+ T +
Sbjct: 272 FLSNTAH 278
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.80
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 324 IARECAQ--SPDEPSCYNCNKTGHIARNCPE 410
+ R+C Q +P + C+ C++ GH +CP+
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQ 1372
Score = 27.9 bits (59), Expect = 9.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQ 189
C++C+R GHF C Q
Sbjct: 1357 CHQCHRIGHFVESCPQ 1372
>AF026207-2|AAK71372.1| 233|Caenorhabditis elegans Hypothetical
protein H42K12.2 protein.
Length = 233
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -3
Query: 483 GTVAGDVARTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRA 328
G D RTCC SA+ P+ S + C P CNT AR ++R A
Sbjct: 141 GLPESDNNRTCCGCVSSAASGPS---SSLILCFPGGRRCNTHARTEALRGTA 189
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/76 (31%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Frame = -3
Query: 459 RTCCSYSRSASQTPAPPRDSSVRCGPS-CCSC----NTTARPGSVRTRALCA-PCRY--- 307
RTCC A+ P PP P+ CC T R G C PC Y
Sbjct: 130 RTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDCGCGRPCCYYQN 189
Query: 306 --ICSNGQPLPCNPSQ 265
C+ GQ C P Q
Sbjct: 190 PTCCNQGQKACCPPEQ 205
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/39 (25%), Positives = 15/39 (38%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 258
C+ C GH AR C + + G+ Q C +
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSCQAE 614
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 195 RGVAGFRF-QSAT*EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYN 371
+ +AG + QS + QP E + C C+GT + + D SC++
Sbjct: 222 KSLAGLSYHQSYLHDQKSSQPLVKLLSPSIEISTSCDFCSGTAFMNKNTKLPEDLVSCHD 281
Query: 372 CNKTGH 389
C ++GH
Sbjct: 282 CGRSGH 287
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 410
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 267 ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGH----IARNCPE 410
A+ C+ D + Y+ GH R+C D P Y C K G I +NCP+
Sbjct: 37 AKKCENYFDCQQYQTCIFGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = -3
Query: 456 TCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCAPCRYICSNGQPLPC 277
+C + SA T + C SC SC+ + + PC C++G C
Sbjct: 179 SCQNQCSSACTTMTCRQTCQNTCLGSCNSCSGGGCNSNNSNLVVVTPCERSCNSGCRSTC 238
Query: 276 NPSQSVLSVALEA 238
+ S S LSV + A
Sbjct: 239 S-STSTLSVCIPA 250
>U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 11 protein.
Length = 395
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -3
Query: 441 SRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCAP---CRYICSNGQPLPCNP 271
S++A+ T P RD++V+ G + CNT + + P C C C+P
Sbjct: 272 SQTAAPTYQPYRDTNVQVGGTISQCNTCQTQCNQECQVQQTPVNQCAPQCDAQCQPACSP 331
Query: 270 SQSVLSVALEALLTLPIETGIPR 202
+ V + + L I + R
Sbjct: 332 AAPAAPVQTQQQIQLTINVPVAR 354
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 243 QVQPTGHFARDCKEEADRCY--RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 404
QV P G F CKE+ RC CN + + C PSC +G NC
Sbjct: 1414 QVCPEGRFGAGCKEKC-RCANGHCNASSGECK-CNLGFTGPSCEQSCPSGKYGLNC 1467
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +3
Query: 243 QVQPTGHFARDCKEEADRCY--RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 404
QV P G F CKE+ RC CN + + C PSC +G NC
Sbjct: 1414 QVCPEGRFGAGCKEKC-RCANGHCNASSGECK-CNLGFTGPSCEQSCPSGKYGLNC 1467
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/53 (26%), Positives = 18/53 (33%)
Frame = +3
Query: 306 CNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGP 464
C I A +P E C NK + R C G + C+K P
Sbjct: 77 CQSACGIPHVLASNPTEEVCEKWNKCDDVKRQCAAAGGNYYAGANFQCSKYTP 129
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 28.3 bits (60), Expect = 7.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPE 410
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 28.3 bits (60), Expect = 7.5
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = -3
Query: 462 ARTCCSYSRSASQTPAPPRDSSVRCGPSCCSCN--TTARPGSVRTRALC-APCRYICSNG 292
A TCCS + + P PP D G N T + GS+ A+ PC IC G
Sbjct: 101 APTCCSCQQGPAGPPGPPGDDG-NGGQDGVRGNDGTDGKEGSLLESAIVNEPC-IICPPG 158
Query: 291 QPLP 280
P P
Sbjct: 159 PPGP 162
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Frame = -3
Query: 459 RTCCSYSRSASQTPAPPRDSSVRCGPSCC-SCNTTA---RPGSVRTRALC-APCRYICSN 295
++ C S S P + V+C PSC +C + P +V+ C C+ C
Sbjct: 106 QSTCQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQ 165
Query: 294 GQPL-PCNP 271
QP+ C P
Sbjct: 166 TQPIQQCQP 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,519,365
Number of Sequences: 27780
Number of extensions: 370208
Number of successful extensions: 1571
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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