Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0189
(863 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 66 3e-11
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 62 6e-10
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 58 6e-09
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 52 4e-07
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 52 5e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 50 3e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 50 3e-06
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 48 8e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 2e-05
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 44 1e-04
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 43 3e-04
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 39 0.005
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.007
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.007
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.009
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.046
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 35 0.080
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.11
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.25
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.25
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.32
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.32
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 32 0.57
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 32 0.57
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.75
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 31 0.99
At3g31950.1 68416.m04046 hypothetical protein 31 0.99
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 1.3
At5g47430.1 68418.m05844 expressed protein 30 1.7
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.7
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 30 1.7
At4g17410.1 68417.m02607 expressed protein 30 1.7
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 30 1.7
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.7
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.7
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 30 2.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 2.3
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 3.0
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 29 4.0
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 4.0
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 5.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 29 5.3
At4g06479.1 68417.m00885 hypothetical protein 29 5.3
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 29 5.3
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 5.3
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 7.0
At2g31850.1 68415.m03889 expressed protein 28 7.0
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 28 9.2
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 9.2
At4g06526.1 68417.m00938 hypothetical protein 28 9.2
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 28 9.2
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 28 9.2
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 66.1 bits (154), Expect = 3e-11
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Frame = +3
Query: 258 GHFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIA 395
GHFARDC ++ + CY C G GHIAR+CA + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 396 RNCPEGGRESA--TQTCYNCNKSG 461
R+C + G CY C K G
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEG 289
Score = 60.5 bits (140), Expect = 1e-09
Identities = 46/153 (30%), Positives = 59/153 (38%), Gaps = 34/153 (22%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDC------------KEEADRCYRCNGTGHIAR 332
GG G G R TGHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 333 ECAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 455
+C Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 456 SGPHLPQLSRRHQ---DVLRVGKPGHISRECDE 545
G + + Q + G GH++R+CD+
Sbjct: 238 VGHIARDCATKRQPSRGCYQCGGSGHLARDCDQ 270
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Frame = +3
Query: 258 GHFARDC--KEEADR-CYRCNGTGHIARECAQ-----SPDEPSCYNCNKTGHIARNC 404
GH ARDC K + R CY+C G+GH+AR+C Q ++ +CY C K GH AR C
Sbjct: 239 GHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 45.2 bits (102), Expect = 6e-05
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Frame = +3
Query: 297 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 434
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 435 ---TCYNCNKSG 461
CY C G
Sbjct: 162 GNDGCYTCGDVG 173
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 258
CY+C +GH AR+C Q R SG C+KC ++
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKE 288
Score = 35.9 bits (79), Expect = 0.035
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
Frame = +3
Query: 255 TGHFARDCKEEA-------DRCYRCNGTGHIARECA 341
+GH ARDC + + CY+C GH AREC+
Sbjct: 261 SGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 35.1 bits (77), Expect = 0.061
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECT 186
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C GHFAR+CTQ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
S CY C GH +++C GG +R E C+ C
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 32.7 bits (71), Expect = 0.32
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 249
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 133 SSVCYKCNRTGHFAREC 183
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 61.7 bits (143), Expect = 6e-10
Identities = 37/100 (37%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 437
GHFARDC C C GHIA EC E C+NC + GH+A NC G
Sbjct: 64 GHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------I 113
Query: 438 CYNCNKSGPHLPQLSRRHQDV--LRV----GKPGHISREC 539
C++C KSG S LR+ K GH++ +C
Sbjct: 114 CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +3
Query: 258 GHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 413
GH A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 147 GHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/88 (30%), Positives = 39/88 (44%)
Frame = +3
Query: 285 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGP 464
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + G
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPG- 102
Query: 465 HLPQLSRRHQDVLRVGKPGHISRECDEA 548
H+ GK GH +R+C +
Sbjct: 103 HVASNCSNEGICHSCGKSGHRARDCSNS 130
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +3
Query: 255 TGHFARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 404
+GH ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 120 SGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDC 172
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +3
Query: 255 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCN------KTGHIARNCPEGG 416
+GH ARDC+ + C C+ +GH+AR C + S + G ++R +
Sbjct: 165 SGHIARDCRND-PVCNICSISGHVARHCPKGDSNYSDRGSRVRDGGMQRGGLSRMSRDRE 223
Query: 417 RESATQTCYNCNKSG 461
SA C+NC G
Sbjct: 224 GVSAMIICHNCGGRG 238
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGV 198
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 246
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 58.4 bits (135), Expect = 6e-09
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 19/87 (21%)
Frame = +3
Query: 258 GHFARDCKEE--------ADRCYRCNGTGHIAREC-AQSPD-----EPSCYNCNKTGHIA 395
GHFARDC++ CY C G GHIA+ C ++ P +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 396 RNCPEGGRESA-----TQTCYNCNKSG 461
R+C G S+ + C+ C K G
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEG 291
Score = 55.2 bits (127), Expect = 5e-08
Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 20/103 (19%)
Frame = +3
Query: 291 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 440
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 441 YNCNKSGPHLPQLSRR----------HQDVLRVGKPGHISREC 539
Y C +G RR GK GH +REC
Sbjct: 255 YECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 49.6 bits (113), Expect = 3e-06
Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 38/157 (24%)
Frame = +3
Query: 186 AGGR--GVAGFRFQSAT*EVLQVQPTGHFARDCKEEADR-----------CYRCNGTGHI 326
+GG+ G G R E GHFARDC++ CY C GH+
Sbjct: 113 SGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHL 172
Query: 327 AREC-------------AQSPDEPSCYNCNKTGHIARNCPEGGRESAT---QTCYNCNKS 458
A++C + CY C GH AR+C + G + TCY C
Sbjct: 173 AKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGV 232
Query: 459 GPHLPQLSRRH---------QDVLRVGKPGHISRECD 542
G H+ ++ + G GH++R+CD
Sbjct: 233 G-HIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCD 268
Score = 41.1 bits (92), Expect = 0.001
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Frame = +3
Query: 234 EVLQVQPTGHFARDCKEEADR-----CYRCNGTGHIAREC--------------AQSPDE 356
+ ++V G + + KE + R C+ C GH+A++C +S E
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 357 PSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKP 518
CY C GH AR+C + GG + CY+C + G HL + R R G
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVG-HLAKDCRGGSGGNRYGGG 188
Query: 519 G 521
G
Sbjct: 189 G 189
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 258
CY+C TGH AR+C + G S SG KCF C ++
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKE 290
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECT 186
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 10/38 (26%)
Frame = +3
Query: 255 TGHFARDCKEE----------ADRCYRCNGTGHIAREC 338
TGH ARDC +++C+ C GH AREC
Sbjct: 260 TGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSG 216
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 249
S CY C GH A+ CT + S G R C++C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYEC 257
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 249
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPD---EPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGP 464
C+ C+ HIA+ C + + C C + GH +NCPE ES+ + CYNC +G
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGH 135
Query: 465 HLPQLSRRHQD-------VLRVGKPGHISRECDEARN 554
L +D GHIS+ C E ++
Sbjct: 136 SLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKH 172
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Frame = +3
Query: 240 LQVQPTGHFARDCKE------EADRCYRCNGTGHIARECAQSPDE-----PSCYNCNKTG 386
LQ + GH ++C E E CY C TGH C ++ SC+ C G
Sbjct: 102 LQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQG 161
Query: 387 HIARNCPE 410
HI++NCPE
Sbjct: 162 HISKNCPE 169
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +3
Query: 261 HFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEG 413
H A+ C E+++ C +C GH + C + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 414 GRESATQ--TCYNCNKSG 461
+ T+ +C+ C G
Sbjct: 144 MEDGGTKFASCFICKGQG 161
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 434
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 154 CFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +3
Query: 309 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRR 488
+ T H R P E C+ C+ HIA+ CPE + C C + G L +
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 489 HQD 497
+ +
Sbjct: 118 NNE 120
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 285 EADRCYRCNGTGHIARECAQS---------PDEPSCYNCNKTGHIARNCPEGGRES 425
EA CYRC GH AREC S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 258 GHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-S 425
GH + +C R C+ C H A++C++ D CY C KTGH A++CP+ + S
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGS 231
Query: 426 ATQTCYNCNKSG 461
C C G
Sbjct: 232 KGAVCLRCGDFG 243
Score = 44.0 bits (99), Expect = 1e-04
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 31/98 (31%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 413
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 414 ----GRESATQTCYNCNKSG------PHLPQLSRRHQD 497
GRES T CY CN SG P+ Q+S+R ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQVSKRDRE 383
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 252
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 11/41 (26%)
Frame = +3
Query: 258 GHFARDC-----------KEEADRCYRCNGTGHIARECAQS 347
GHFAR+C +E CYRCNG+GH AREC S
Sbjct: 334 GHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNRQDT 264
S ++CY+CN +GHFAREC VS RD + K K N++++
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
+CY C GH+ C P SCY C + GH C ES N N S
Sbjct: 262 QCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEES------NENDS 312
Query: 459 G-PHLPQLSRRHQDVLRVGKPGHISREC 539
P SR + R G+ GH +REC
Sbjct: 313 ATPERLFNSREASECYRCGEEGHFAREC 340
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
SCY+C + GH + NCP + + C+ C Q S+ H D K GH +++C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKGH-DCYICKKTGHRAKDC 223
Query: 540 -DEARN 554
D+ +N
Sbjct: 224 PDKYKN 229
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 297 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSG 461
CY C GH + C + C+ C H A+ C +G CY C K+G
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTG 217
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEE---ADRCYRCNGTGHI 326
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEE---ADRCYRCNGTGHI 326
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEE---ADRCYRCNGTGHI 326
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQG 192
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTG---HFARDCKEEADRCYRCNGTGHI 326
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 54 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 110
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNC 404
AR+C + CY C + GHI RNC
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 258 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 350
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 35.9 bits (79), Expect = 0.035
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHI 527
P C+NC GH AR+C G ++ CY C + G H+ + + + + G
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERG-HIERNCKNSPSPKKARQGGSY 151
Query: 528 SRECDEARN 554
SR ++R+
Sbjct: 152 SRSPVKSRS 160
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQG 192
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 156 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPTG---HFARDCKEEADRCYRCNGTGHI 326
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 13 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 69
Query: 327 ARECAQSPDEPSCYNCNKTGHIARNC 404
AR+C + CY C + GHI RNC
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 258 GHFARDCK--EEADRCYRCNGTGHIARECAQSP 350
GH+ARDC + ++CYRC GHI R C SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 35.9 bits (79), Expect = 0.035
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 348 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHI 527
P C+NC GH AR+C G ++ CY C + G H+ + + + + G
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERG-HIERNCKNSPSPKKARQGGSY 110
Query: 528 SRECDEARN 554
SR ++R+
Sbjct: 111 SRSPVKSRS 119
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 133 SSVCYKCNRTGHFARECTQG 192
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 48.0 bits (109), Expect = 8e-06
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 12/98 (12%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 443
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 444 NCNKSGPHLPQLSRRHQD------VLRVGKPGHISREC 539
C + G H RH D G+ GH +C
Sbjct: 81 RCGQLG-HTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 44.8 bits (101), Expect = 8e-05
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPH 467
CYRC GH C + D+ PSC+ C + GH C + GP
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGP- 137
Query: 468 LPQLSRRHQDVLRVGKPGHISRECDEA 548
S R Q+ R + GH +C ++
Sbjct: 138 -DSSSVRFQENTREEEEGHFEHQCPDS 163
Score = 36.3 bits (80), Expect = 0.026
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Frame = +3
Query: 192 GRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS- 362
G + RFQ T E + GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 363 -----CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLS 482
CY C GHIAR+CP + + C S L LS
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQVVSISLSTFCALSSSVLSFLS 236
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 67 SLNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 201
S + +IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 172 SREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.011
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect(2) = 2e-05
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPEGGR 419
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.035
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 136 SVCYKCNRTGHFARECTQGG 195
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 34.3 bits (75), Expect = 0.11
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGG 416
CY C + GH+AR+C EGG
Sbjct: 131 CYKCGEPGHMARDCSEGG 148
Score = 29.1 bits (62), Expect(2) = 2e-05
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQ 344
CY+C GH+AR+C++
Sbjct: 131 CYKCGEPGHMARDCSE 146
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 44.4 bits (100), Expect = 1e-04
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Frame = +3
Query: 258 GHFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS---------- 362
GH+ARDC ++D C++C GH +R+C AQS + EP
Sbjct: 246 GHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGE 305
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGHISREC 539
CY C K GH +R+C G+ S Q KS + D + GK GH SR+C
Sbjct: 306 CYKCGKQGHWSRDCT--GQSSNQQFQSGQAKS-------TSSTGDCYKCGKAGHWSRDC 355
Score = 41.5 bits (93), Expect = 7e-04
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Frame = +3
Query: 297 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCPEGGRESATQTCYNC 449
CY+C GH AR+C QS P C+ C K GH +R+C T +
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDC----------TAQSG 288
Query: 450 N-KSGPHLPQLSRRHQDVLRVGKPGHISREC 539
N K P + S + + GK GH SR+C
Sbjct: 289 NPKYEPGQMKSSSSSGECYKCGKQGHWSRDC 319
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 124 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNR 255
A + + CYKC + GH+AR+CT V D+G + CFKC +
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGK 275
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +1
Query: 97 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRQ 258
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +Q
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 97 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 234
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 35.9 bits (79), Expect = 0.035
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 130 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNR 255
SS CYKC + GH++R+CT Q SG + C+KC +
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Frame = +3
Query: 297 CYRCNGTGHIARECA-QSPDEP-------------SCYNCNKTGHIARNCPEGGRESAT 431
CY+C GH +R+C QS ++ CY C K GH +R+C + + T
Sbjct: 306 CYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNT 364
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +3
Query: 297 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 458
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 459 GPHLPQLSRRHQDVLRVGKP 518
+ R + + R+ KP
Sbjct: 96 DHRFNLIIWRSRCLFRLMKP 115
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGPHLPQLSRRHQDVLRVGKPGH 524
D +CY C K GH AR+C + +A TCY C++ G + D +V GH
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTD--QVNPKGH 88
Score = 31.9 bits (69), Expect = 0.57
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 142 CYKCNRTGHFAREC 183
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +3
Query: 189 GGRGVAGFRFQSAT*EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 362
GGRG G + GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 363 CYNCNKTGHIARNCPEGG 416
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.011
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.026
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 231
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEG 413
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 285 EADRCYRCNGTGHIAREC 338
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 231
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEG 413
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 285 EADRCYRCNGTGHIAREC 338
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 231
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.1 bits (67), Expect = 0.99
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 294 RCYRCNGTGHIAREC 338
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGG 416
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 142 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 231
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGP 464
CY C ++GH AR C G + + ++S P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPP 131
Score = 29.5 bits (63), Expect = 3.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 294 RCYRCNGTGHIAREC 338
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 34.7 bits (76), Expect = 0.080
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQTC-------YNCNKSGPHLPQLSRRHQDVLRV 509
D P C+NC H R CP SA + N N SGP LP SR +Q +
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSGPRLP--SRYYQKT-QT 295
Query: 510 G-----KPGHISRECDEARN*PQPPCLPYNQXMYIMMPTHGTIKQKDXH 641
G KPG + E + N + P+ M + G + +D H
Sbjct: 296 GKYDGLKPGTLDAETRQLLNLGELDPPPWLNRMREIGYPPGYLAPEDDH 344
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 416
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVSRDSG 216
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 363 CYNCNKTGHIARNCP-EGGRE 422
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 471 PQLSRRHQDVLRVGKPGHISREC 539
P R D + GKPGH +REC
Sbjct: 111 PSGGRGGGDCFKCGKPGHFAREC 133
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 234 EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 356
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.75
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.99
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGG 416
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.1 bits (72), Expect = 0.25
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 234 EVLQVQPTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE 356
+V Q++ G ++ K D C++C GH AR+C + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
Score = 31.5 bits (68), Expect = 0.75
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.99
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGG 416
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 294 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 416
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.32
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGG 195
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.43
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGG 416
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +3
Query: 246 VQPTGHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 416
+ P+G A + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 417 RESATQTCYNC 449
RE A+ C C
Sbjct: 638 REEASSLCIRC 648
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +3
Query: 270 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 446
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 447 CNKSGPHLPQLSRRHQDVLRVGK 515
C S P S + +G+
Sbjct: 181 CKSSAGSSPHDSPLRNNFSPLGR 203
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 354 EPSCYNCNKTGHIARNCPEGGRESATQ 434
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/67 (28%), Positives = 26/67 (38%)
Frame = +3
Query: 324 IARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVL 503
I+ E EP Y K I C S C+K P ++HQD+
Sbjct: 813 ISAEIPDKDKEPELYEVIKNSMIHGPCGAANMNSPCMVEGKCSKQYP------KKHQDIT 866
Query: 504 RVGKPGH 524
+VGK G+
Sbjct: 867 KVGKDGY 873
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.99
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +3
Query: 297 CYRCNGTGHIARECA-QSPDEP------SCYNCNKTGHIARNCP 407
C C T H+ +C SP P CY C GH++ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 1.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 139 VCYKCNRTGHFAREC 183
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.7
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 363 CYNCNKTGHIARNC 404
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 297 CYRCNGTGHIAREC 338
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 303 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 416
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQGG 195
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 112 SKPIAMSSSVCYKCNRTGHFAREC 183
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Frame = +3
Query: 267 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 443
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 444 NCNKSGPH---LPQ--------LSRRHQDVLRVGKPGHISREC 539
C G + P+ +S R+ G+ GH SR C
Sbjct: 294 GCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Frame = +3
Query: 261 HFARDCKEEADRCYR---CNGTGHIARECAQSPD---------EPSCYNCNKTGHIARNC 404
H+ + ADR +R C G GH R C +S C C + GH +R C
Sbjct: 277 HYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 139 VCYKCNRTGHFARECTQGG 195
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 297 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 431
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 419
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 455
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 419
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 455
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 142 CYKCNRTGHFARECTQGGVVS 204
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSP 350
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 324 IARECAQSP-DEPSCYNCNKTGHIARNCP 407
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 142 CYKCNRTGHFAREC 183
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +3
Query: 303 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLS 482
RC TG I EC S + S + N CP+G SA++ + N +
Sbjct: 40 RCLVTGAINFECDSSKNVNSSLSSNSVVTSGYACPQGFEASASRDGSDFNTKAKRVKLSG 99
Query: 483 RRHQD 497
+H D
Sbjct: 100 NKHLD 104
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 4.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 363 CYNCNKTGHIARNCP 407
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 127 MSSSVCYKCNRTGHFAREC 183
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 360 SCYNCNKTGHIARNCPE 410
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 324 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
++R+ ++S E +C+ C + GH +CP E + Y ++
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEA 192
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 404
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 350 GRAVVLQLQQDGPHRTELSRGGAGVCDADLL 442
G +VV LQ DGPH ++R G AD+L
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVL 608
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 279 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 458
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 459 G 461
G
Sbjct: 128 G 128
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 100 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 210
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQS 347
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 351 DEPSCYNCNKTGHIARNCPE 410
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 477 VAGDVARTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGS 343
++G +C S S P S SCC C++TA GS
Sbjct: 67 LSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 70 LNDRYISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGV-VSRDS 213
L +R +SA A ++S C KC + GH+ EC V +SR S
Sbjct: 77 LGERKDKTMSASAVGSS-ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 363 CYNCNKTGHIARNCPEGG 416
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 297 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 407
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = +3
Query: 282 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 452
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 453 KSG 461
G
Sbjct: 256 GKG 258
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/67 (25%), Positives = 25/67 (37%)
Frame = +3
Query: 324 IARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGPHLPQLSRRHQDVL 503
I+ E EP Y K I C S C+K P ++HQD+
Sbjct: 823 ISAEIPDKEKEPDLYEVIKNSMIHGPCGSANVNSPCMVDGECSKLYP------KKHQDIT 876
Query: 504 RVGKPGH 524
++G G+
Sbjct: 877 KIGSDGY 883
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,688
Number of Sequences: 28952
Number of extensions: 325552
Number of successful extensions: 1355
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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