Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0188
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    29   0.062
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   4.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   4.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   4.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   4.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   4.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   4.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   4.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   4.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   7.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   7.1  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 0.062
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 264 PYARPQAAPTPEPGALSPISQHALYTRPVAPALPEPP 154
           P A P     P P   SPI    +   P  P  P PP
Sbjct: 68  PVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 705 PWVRFPTGYPTPTNFPLKL 761
           PW + P G P+P++ P  L
Sbjct: 66  PWKKSPQGAPSPSSTPSSL 84


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -3

Query: 198 ALYTRP-VAPALPEPPYTILAP 136
           A Y+ P VAP  P+ PY   AP
Sbjct: 41  ACYSPPQVAPQYPQHPYAAPAP 62


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 217 LTDLSACALHASCRSGTTGATLH 149
           L D S C   A+C+  TT  T H
Sbjct: 64  LCDSSPCLNGATCQDHTTHYTCH 86


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 232 GSRGGLRPSIGRTADMGCAQSAEERAAG 315
           G R   RP +  T   GCA+++     G
Sbjct: 40  GRRRAARPGVVTTPRWGCARASSATTMG 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,482
Number of Sequences: 336
Number of extensions: 4160
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)