Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0188
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 61 2e-10
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 52 8e-08
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 28 1.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 2.6
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 27 2.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.6
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 27 4.5
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 27 4.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 7.8
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 26 7.8
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/68 (42%), Positives = 43/68 (63%)
Frame = +2
Query: 344 LKENGIQASKDIKLLLLGNCESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTSSRSF 523
+K N DIK+LLLG +SGK+TI+KQM++++ GF+ KQYR +++ N S
Sbjct: 64 VKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLC 123
Query: 524 AILRAMPN 547
+L AM N
Sbjct: 124 LLLEAMDN 131
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 52.4 bits (120), Expect = 8e-08
Identities = 26/77 (33%), Positives = 47/77 (61%)
Frame = +2
Query: 332 IDKNLKENGIQASKDIKLLLLGNCESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTS 511
I+K ++ + K K+LLLG +SGKSTI KQ+KI++++GF+ E+ + PV+ N
Sbjct: 20 IEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPVIRRNLL 79
Query: 512 SRSFAILRAMPNFGHHL 562
+ +++ + G +L
Sbjct: 80 ESAKTLVKIIVQKGINL 96
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 318 AARCTLFGRLGAPHIGSSPYARPQAAPTPEPGA-LSPISQHALYTRPVAPALPEPP 154
A LFG + H S+P RPQ+A P+ A P ++ P AP +P P
Sbjct: 1672 ALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -3
Query: 285 APHIGSSPYARPQAA--PTPEPGALSPISQHALYTRPVAPALPEPP 154
AP G P +P A P P P P+ + ++ PV P PP
Sbjct: 1173 APSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -3
Query: 273 GSSPYARPQAA--PTPEPGALSPISQHALYTRPV-AP--ALPEPPYTILAP 136
G+ P +P A P P P P+ + ++ PV AP A P P ++ AP
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -2
Query: 355 ILFQVLIDQFASSSPLHALRPTGRTPY 275
ILF LI +SSS LH L P+G PY
Sbjct: 183 ILFNALISILSSSSTLHKLYPSG-LPY 208
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 285 APHIGSSPYARPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 136
AP + S+P RP A PE A S + A+ P A ++P+PP +AP
Sbjct: 538 APEVPSAPQ-RPAAPVVPE--APSVPQRPAVPVVPEALSVPQPPVAPVAP 584
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -3
Query: 294 RLGAPHIGSSPYARPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 136
R AP + +P + A P ALS P P++P+PP + P
Sbjct: 547 RPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVP 599
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 294 RLGAPHIGSSPYA-RPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYTILAP 136
R P + +P +P AAP P S + A+ P AP++P+PP + P
Sbjct: 622 RPAVPVVPEAPSVPQPPAAPVV-PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVP 674
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 690 AVQGXPWVRFPTGYPTPTNFPLKLFPWD 773
+V G + +FPT YP P + L WD
Sbjct: 10 SVSGDKYPQFPTDYPVPLRAYVNLEDWD 37
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 359 IQASKDIKLLLLGNCESGKSTIVKQMKIIHESGFTNE 469
I I + +G+ GKST+VK + +H F NE
Sbjct: 18 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE 54
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +2
Query: 284 APSRPKSVQRAARSKLIDK--NLKENGIQASKDI--KLLLLGNCESGKSTIVKQMKIIHE 451
+P+ PK R+ S +LK++ +A + + +LL G+C+ ++ + H+
Sbjct: 7 SPASPKPTSRSRESSRSPSVTDLKDHS-KAKRTLCRNILLYGSCKHSENGCAFR----HD 61
Query: 452 SGF--TNEDFKQYRPVVYSNTSSRSFAILRAMP 544
F ++E+ +QY N +S SF +RA+P
Sbjct: 62 GPFIPSSENLEQYSVKKKLNAASASFQPVRALP 94
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 270 SSPYARPQAAPTPEPGALSPISQHALYTRPV----APALPEPPYT 148
+SP +PQ P P A +P +H PV +P++P P T
Sbjct: 719 NSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLT 763
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -1
Query: 578 SVSIAIDDAQSWAWHAR-WRTSDWTYCC 498
++S ++D +Q W WR S YCC
Sbjct: 107 TLSYSLDKSQQWFGKGNAWRVSHGVYCC 134
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 26.6 bits (56), Expect = 4.5
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Frame = +2
Query: 266 ELPIWGAPSRPKSVQRAARSKLIDKN---------LKENGIQA-SKDIKLLLLGNCESGK 415
E P W +R ++ R+ L K L++ ++A SK+ L+LLG SGK
Sbjct: 480 ETPSWRQATRNANISYGKRTTLSMKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGK 539
Query: 416 STIVKQMKIIHESGFTNE 469
+T + Q + E G+T++
Sbjct: 540 TTQITQ--YLAEEGYTSD 555
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -3
Query: 273 GSSPYARPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT 148
G A P A P P P ++ + A + V P PP T
Sbjct: 882 GGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPAT 923
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -3
Query: 240 PTPEPGALSPISQHALYTRPVAPALPEPPY--TILAPN 133
P P PG + A T P AP +P P+ TI A N
Sbjct: 290 PPPPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQN 327
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/26 (34%), Positives = 22/26 (84%)
Frame = +2
Query: 365 ASKDIKLLLLGNCESGKSTIVKQMKI 442
++K++++L+LG +GK+TI+ ++K+
Sbjct: 18 SNKEMRILMLGLDAAGKTTILYKLKL 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,358,788
Number of Sequences: 5004
Number of extensions: 68284
Number of successful extensions: 250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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