Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0188
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.89 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 344 LKENGIQASKDIKLLLLGNCESGKSTIVKQMKIIHESGFTNE 469
           L    I     I +  +G+   GKSTIVK +  +    F NE
Sbjct: 32  LSREVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNE 73


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 227 GSGVGAACGLA*GELPIWGAPSRPKSVQRAARSKL 331
           GSG+G    L     P + APSR  +V++   + L
Sbjct: 793 GSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATL 827


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 227 GSGVGAACGLA*GELPIWGAPSRPKSVQRAARSKL 331
           GSG+G    L     P + APSR  +V++   + L
Sbjct: 789 GSGIGKVVQLKVNSSPYFAAPSRLVTVKKGDTATL 823


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 144 ISCRVAPVVPERQDACRAHAERSVR 218
           ISCR   V  E   ACR   E  +R
Sbjct: 627 ISCRQGTVPDETHSACRDIPEEFLR 651


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 486  GPWSTAIRPVARSPSCVPCPTLGIIYGNRDRESXG 590
            GP ++  RPV   P  VP   L     +R R   G
Sbjct: 1356 GPSASGGRPVPERPERVPTVDLSPSPSDRGRNDDG 1390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,974
Number of Sequences: 438
Number of extensions: 5291
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)