Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0187
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   3.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.8  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.0  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 164 NCCSPCEQIG*ELGKIVEHLE 102
           NCC   +Q+G E  KI+E+++
Sbjct: 213 NCCEAIQQLGEEKQKIIEYVQ 233


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 462  SLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLK 340
            SL  S  C P +  A+ + W+ E G   +    T S  VLK
Sbjct: 1611 SLEVSQRCSPKQSGATRSVWFNELGPLTLSFLPTLSDTVLK 1651


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 367 GYSVVDCIKKI*RESQLAVIQSGPRLRIQLFRRVI 263
           G  + DC ++  RESQ     SGP L +  F+RVI
Sbjct: 99  GIKIQDCSERSLRESQ-----SGPLLLVDPFQRVI 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,860
Number of Sequences: 5004
Number of extensions: 56663
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)