Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0187
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              31   0.77 
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      31   1.0  
SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  

>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 230 RFNGYQPVLYKDDSSKKLNPEARTALYNGQLGFTLNLFNTINDAVPDDNIF 382
           R   YQP+++ D   +  NP AR A Y    G  +  F ++ + V +DN++
Sbjct: 702 RAQAYQPMVHYDPMPQTSNPAARPAFYAVPPGGPVQ-FGSVYNPVNNDNVY 751


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 326 FTLNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALREIF 469
           F L+L   +       N+F+SP S+  +L + YL + G T   + + F
Sbjct: 13  FALDLHRVLTAQDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTF 60


>SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +3

Query: 12  LARAHVTYRTIFFKANRIIIHNKIILYSITFQVFDDFT*FSTNLLARRTTVTCTPLEDII 191
           +A A +T  TI   +   I    II  +IT  +    T   T  +   TT+T T    II
Sbjct: 120 IATASITTITITITSTSTITITMIITITITITITITITMIIT--IINTTTITITSTITII 177

Query: 192 RTTMRCLIVVLFVVSTVTSQCSTKMTL 272
            T    +I+ + +   +T   +  +T+
Sbjct: 178 ITITITMIITMIITIIITITITITITI 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,122,947
Number of Sequences: 59808
Number of extensions: 441405
Number of successful extensions: 1036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)