Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0187
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    33   0.22 
Z19154-6|CAC35885.2|  388|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      33   0.22 

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical
           protein C35C5.1 protein.
          Length = 2962

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 248 PVLYKDDSSKKLNPEARTALYNGQLGFTLNLFNTINDAVPDDNIFFSPFSVY-HSLLL 418
           PVLYK  S    N  +     N QL   LN     ND +PD + F   F +  HS+ L
Sbjct: 343 PVLYKHHSLFPKNQSSELEKINVQLRIRLNSKRQNNDVIPDSSYFVREFLMQKHSISL 400


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
           protein C35C5.1 protein.
          Length = 2962

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 248 PVLYKDDSSKKLNPEARTALYNGQLGFTLNLFNTINDAVPDDNIFFSPFSVY-HSLLL 418
           PVLYK  S    N  +     N QL   LN     ND +PD + F   F +  HS+ L
Sbjct: 343 PVLYKHHSLFPKNQSSELEKINVQLRIRLNSKRQNNDVIPDSSYFVREFLMQKHSISL 400


>Z19154-6|CAC35885.2|  388|Caenorhabditis elegans Hypothetical
           protein C40H1.7 protein.
          Length = 388

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 26/82 (31%), Positives = 41/82 (50%)
 Frame = +2

Query: 173 TIRGHHSNHNEVSNCGIVRRFNGYQPVLYKDDSSKKLNPEARTALYNGQLGFTLNLFNTI 352
           ++RG H +H +  +   +  FNG  P L     +KK N    +  Y+G LG  L   N I
Sbjct: 137 SVRGSHGDH-QYYDLWKIGNFNGTVPFLNIGRVTKKFNDNFESLWYSG-LGEDLQ--NLI 192

Query: 353 NDAVPDDNIFFSPFSVYHSLLL 418
            DA PD  ++ + +S+  S+ L
Sbjct: 193 -DAYPDYQLWITGYSMGASIAL 213


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 248 PVLYKDDSSKKLNPEARTALYNGQLGFTLNLFNTINDAVPDDNIFFSPFSVY-HSLLL 418
           PVLYK  S    N  +     N QL   LN     ND +PD + F   F +  HS+ L
Sbjct: 343 PVLYKHHSLFPKNQSSELEKINVQLRIRLNSKRQNNDVIPDSSYFVREFLMQKHSISL 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,816
Number of Sequences: 27780
Number of extensions: 333152
Number of successful extensions: 847
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)