Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0187
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    32   0.37 
At1g62170.1 68414.m07013 serpin family protein / serine protease...    29   2.6  
At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putativ...    29   3.4  
At5g21160.1 68418.m02528 La domain-containing protein / proline-...    29   4.5  

>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 164 YLHTIRGHHSNHNEVSNCGIVRRFNGYQPVLYKDDSSKK-LNPEARTALYNGQLGFT 331
           Y+H  +G  +N     N    R++ G      ++D  KK  NP   T L+NG+LGFT
Sbjct: 219 YVHPWKGILANMKRTFN-EKTRKYAGESGSKIREDLIKKGFNPHKVTPLWNGRLGFT 274


>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 350 INDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALR 460
           I+    + N  FSP S+  +L +   SSGG+  E LR
Sbjct: 83  ISSVAKNSNFVFSPASINAALTMVAASSGGEQGEELR 119


>At3g48450.1 68416.m05289 nitrate-responsive NOI protein, putative
           similar to nitrate-induced NOI protein [Zea mays]
           GI:2642213
          Length = 89

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 611 ATMHA*SPLPRFGTWNFXGNPGAAPGY 691
           AT +   PLP+FG W+   NPG+A G+
Sbjct: 2   ATGNRARPLPKFGEWD-ATNPGSAEGF 27


>At5g21160.1 68418.m02528 La domain-containing protein /
           proline-rich family protein contains proline-rich
           extensin domains, INTERPRO:IPR002965, PF05383: La domain
          Length = 826

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +2

Query: 647 GTWNFXGNP--GAAPGYIHXLGVPGYQGPXIRV*NPPLGYLR 766
           G  NF   P  G APG++   G PG+ GP   +  PP G +R
Sbjct: 212 GPRNFGRPPFMGPAPGFLVGPG-PGFPGPVYYLPGPPPGAIR 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,206
Number of Sequences: 28952
Number of extensions: 294089
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)