Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0185
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    33   0.067
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.4  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    26   7.6  

>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 32.7 bits (71), Expect = 0.067
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 346 ALLNSTIYLAYLAILHVLHEDIKPK 272
           +L +STIY+AY  I H+LH D+  K
Sbjct: 617 SLTDSTIYMAYYTICHLLHSDVYGK 641


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 322  LAYLAILHVLHEDIKP 275
            LAY+   H+LH DIKP
Sbjct: 1149 LAYIHSQHILHRDIKP 1164


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +1

Query: 529 YIKLTHQMCVTSTYYHYQLKIRVFXYKNG----ILRVAKATIXPQ*RAYLVLKKW 681
           YI++ H+M   +    YQ+K R+    NG    ILR    T+ P    Y  L  W
Sbjct: 466 YIRIGHKMGSENYAAFYQVKPRLSTLTNGSFRMILRAVSQTLRPLLDNYSDLDTW 520


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 322 LAYLAILHVLHEDIKPK 272
           L+YL   HV+H DIKP+
Sbjct: 200 LSYLHKKHVIHRDIKPE 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,250
Number of Sequences: 5004
Number of extensions: 60775
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)